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piper
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public |
A lightweight python toolkit for gluing together restartable, robust command line pipelines
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2024-10-02 |
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pyslow5
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public |
slow5lib Python binding
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2024-10-02 |
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perl-convert-binary-c
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public |
Binary Data Conversion using C Types
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2024-10-02 |
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metacache
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public |
MetaCache is a classification system for mapping genomic sequences (short reads, long reads, contigs, ...) from metagenomic samples to their most likely taxon of origin.
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2024-10-02 |
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tissuumaps
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public |
TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene expression data or any kind of point data on top of whole slide images
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2024-10-02 |
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savana
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public |
SAVANA: a somatic structural variant caller for long-read data
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2024-10-02 |
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d4tools
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public |
The D4 command line utility program
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2024-10-02 |
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phyloacc
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public |
Bayesian estimation of substitution rate shifts in non-coding regions
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2024-10-02 |
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galaxy_sequence_utils
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public |
Sequence Utilities from the Galaxy project
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2024-10-02 |
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strangepg
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public |
Strange pangenome-scale interactive graph visualizer
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2024-10-02 |
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gappa
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public |
Genesis Applications for Phylogenetic Placement Analysis
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2024-10-02 |
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nanosim
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public |
NanoSim is a fast and scalable read simulator for Nanopore sequencing data.
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2024-10-02 |
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panacus
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public |
panacus is a tool for computing counting statistics for GFA files
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2024-10-02 |
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hsdfinder
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public |
a tool to predict highly similar duplicates (HSDs) in eukaryotes
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2024-10-02 |
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mhcflurry
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public |
MHC Binding Predictor
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2024-10-02 |
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hsdecipher
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public |
Pipeline for the downstream analysis of highly similar duplicate genes
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2024-10-02 |
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metabolabpy
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public |
Python package to process 1D and 2D NMR spectroscopic data for metabolomics and tracer-based metabolism analysis.
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2024-10-02 |
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nohuman
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public |
Remove human reads from a sequencing run
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2024-10-02 |
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bambamc
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public |
lightweight C implementation of name collating BAM file input and BAM file output
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2024-10-02 |
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open-cravat
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public |
OpenCRAVAT - variant analysis toolkit
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2024-10-01 |
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multiqc
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public |
Create aggregate bioinformatics analysis reports across many samples and tools.
|
2024-10-01 |
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python-hivclustering
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public |
A Python 3 library that makes inferences on HIV-1 transmission networks.
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2024-10-01 |
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afpdb
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public |
A Numpy-based PDB structure manipulation package
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2024-10-01 |
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genomic_address_service
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public |
Genomic Address Service: De novo clustering and cluster address assignment
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2024-10-01 |
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eukulele
|
public |
Easy taxonomic annotation for eukaryotic microbes.
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2024-10-01 |
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peptide-shaker
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public |
Independent platform for interpretation of proteomics identification results.
|
2024-10-01 |
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searchgui
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public |
User-friendly graphical tool for using proteomics identification search engines.
|
2024-10-01 |
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minimizers
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public |
Minimizers extraction from fasta files.
|
2024-10-01 |
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psm-utils
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public |
Common utilities for parsing and handling peptide-spectrum matches and search engine results.
|
2024-10-01 |
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apscale
|
public |
Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
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2024-10-01 |
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pyteomics
|
public |
A framework for proteomics data analysis.
|
2024-10-01 |
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genmod
|
public |
Annotate genetic inheritance models in variant files
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2024-10-01 |
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sphae
|
public |
Phage toolkit
|
2024-10-01 |
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olivar
|
public |
Olivar PCR tiling design
|
2024-10-01 |
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pypints
|
public |
Peak Identifier for Nascent Transcripts Starts (PINTS)
|
2024-09-30 |
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dbghaplo
|
public |
Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn Graph.
|
2024-09-30 |
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yahs
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public |
YaHS, yet another Hi-C scaffolding tool.
|
2024-09-30 |
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catfasta2phyml
|
public |
Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
|
2024-09-30 |
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pybiolib
|
public |
BioLib Python Client
|
2024-09-30 |
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bioconda-utils
|
public |
Utilities for building and managing bioconda recipes.
|
2024-09-30 |
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pytximport
|
public |
pytximport - gene count estimation from alignment-free quantification
|
2024-09-30 |
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spreadgltools
|
public |
Visualising pathogen dispersal in a high-performance browser application
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2024-09-30 |
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seqfu
|
public |
DNA sequence utilities
|
2024-09-30 |
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slow5tools
|
public |
Toolkit for S/bLOW5 format
|
2024-09-30 |
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agfusion
|
public |
Python package to annotate and visualize gene fusions.
|
2024-09-30 |
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viroconstrictor
|
public |
ViroConstrictor is a flexible pipeline for analysis of targeted viral sequencing data
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2024-09-30 |
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r-diffcorr
|
public |
A method for identifying pattern changes between 2 experimental conditions in correlation networks (e.g., gene co-expression networks), which builds on a commonly used association measure, such as Pearson's correlation coefficient. This package includes functions to calculate correlation matrices for high-dimensional dataset and to test differential correlation, which means the changes in the correlation relationship among variables (e.g., genes and metabolites) between 2 experimental conditions.
|
2024-09-30 |
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blaze2
|
public |
Barcode identification from (Nanopore) Long reads for AnalyZing single-cell gene Expression.
|
2024-09-30 |
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gtotree
|
public |
GToTree is a user-friendly workflow for phylogenomics.
|
2024-09-30 |
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ont-modkit
|
public |
A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.
|
2024-09-29 |
