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cpstools
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public |
CPStools is a package for analyzing chloroplast genome sequences.
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2024-10-06 |
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snakemake-interface-executor-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its executor plugins.
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2024-10-06 |
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bioconda-repodata-patches
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public |
generate tweaks to index metadata, hosted separately from anaconda.org index
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2024-10-06 |
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pgrc
|
public |
A tool for compressing the DNA stream of FASTQ datasets.
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2024-10-05 |
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genomad
|
public |
Identification of mobile genetic elements
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2024-10-05 |
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qtlseq
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public |
QTL-seq: pipeline to identify causative mutations responsible for a phenotype
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2024-10-05 |
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mutmap
|
public |
MutMap: pipeline to identify causative mutations responsible for a phenotype
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2024-10-05 |
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vclean
|
public |
vClean: Assessing the contamination of viral genomes
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2024-10-05 |
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maxit
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public |
MAXIT assists in the processing and curation of macromolecular structure data.
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2024-10-05 |
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mashmap
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public |
A fast approximate aligner for long DNA sequences.
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2024-10-04 |
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harpy
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public |
Process raw haplotagging data, from raw sequences to phased haplotypes.
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2024-10-04 |
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phables
|
public |
Phables: from fragmented assemblies to high-quality bacteriophage genomes
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2024-10-04 |
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snakemake-interface-report-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its report plugins.
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2024-10-04 |
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protgraph
|
public |
ProtGraph, a graph generator for proteins.
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2024-10-04 |
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peaks2utr
|
public |
A robust, parallelized Python CLI for annotating three_prime_UTR
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2024-10-04 |
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snakemake-interface-common
|
public |
Common functions and classes for Snakemake and its plugins
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2024-10-04 |
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tidk
|
public |
Identify and find telomeres, or telomeric repeats in a genome.
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2024-10-04 |
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hmftools-sage
|
public |
SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage.
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2024-10-04 |
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kleborate
|
public |
Kleborate: a tool for typing and screening pathogen genome assemblies
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2024-10-04 |
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goldrush
|
public |
Linear-time de novo long read assembler, from the Bioinformatics Technology Lab
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2024-10-04 |
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hmftools-cuppa
|
public |
Predict tissue of origin for tumor samples from WGTS data.
|
2024-10-04 |
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hmftools-cobalt
|
public |
Calculate read-depth counts and GC ratios to use in PURPLE.
|
2024-10-04 |
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hmftools-peach
|
public |
Infer haplotypes for interpretation in a pharmacogenomic context
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2024-10-04 |
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bactopia-py
|
public |
A Python package for working with Bactopia
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2024-10-04 |
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hmftools-amber
|
public |
Generates a tumor BAF file for use in PURPLE.
|
2024-10-04 |
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hmftools-redux
|
public |
Post-processing read alignments to control sequencing errors and biases
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2024-10-04 |
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dnaio
|
public |
Read and write FASTA and FASTQ files efficiently
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2024-10-04 |
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hmftools-virus-interpreter
|
public |
Post-process VIRUSBreakend summary results.
|
2024-10-04 |
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hmftools-pave
|
public |
PAVE annotates SNV/MNV/INDEL calls with consequence on corresponding genes, transcripts, and proteins.
|
2024-10-04 |
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hmftools-bam-tools
|
public |
Rapidly process BAMs for various tasks.
|
2024-10-04 |
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skder
|
public |
skDER & CiDDER: efficient & high-resolution dereplication methods for microbial genomes
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2024-10-04 |
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lighter
|
public |
Lighter is a kmer-based error correction method for whole genome sequencing data
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2024-10-03 |
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tracs
|
public |
Tracs - Fast pairwise transmission inference from single genome and/or metagenomic data
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2024-10-03 |
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orthologer
|
public |
Find orthologous genes as well as mapping to OrthoDB.
|
2024-10-03 |
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pysradb
|
public |
Python package for retrieving metadata and downloading datasets from SRA/ENA/GEO
|
2024-10-03 |
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tbtamr
|
public |
A tool implementing TB-Profiler for reporting of genomic DST for M. tuberculosis in a CPHL
|
2024-10-03 |
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versionix
|
public |
Get version of any tools.
|
2024-10-03 |
|
clusty
|
public |
Clusty is a tool for large-scale data clustering.
|
2024-10-03 |
|
pcaone
|
public |
PCAone - Principal Component Analysis All in One
|
2024-10-03 |
|
longreadsum
|
public |
Long read sequencing data quality control tool
|
2024-10-03 |
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gxf2bed
|
public |
Fastest GTF/GFF-to-BED converter chilling around
|
2024-10-03 |
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strobealign
|
public |
Align short reads using dynamic seed size with strobemers
|
2024-10-03 |
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spec2vec
|
public |
Word2Vec based similarity measure of mass spectrometry data.
|
2024-10-03 |
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pydustmasker
|
public |
Python library for identification and masking of low-complexity regions in nucleotide sequences.
|
2024-10-03 |
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verkko
|
public |
A hybrid genome assembly pipeline developed for telomere-to-telomere assembly of accurate (HiFi, ONT Duplex, ONT HERRO) and long (ONT UL) reads.
|
2024-10-03 |
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k8
|
public |
Lightweight JavaScript shell based on Google's V8 JavaScript engine
|
2024-10-03 |
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rukki
|
public |
Extracting paths from assembly graphs.
|
2024-10-02 |
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mycotools
|
public |
Comparative genomics automation and standardization software.
|
2024-10-02 |
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bactopia-teton
|
public |
Methods used by Bactopia for taxonomic classification
|
2024-10-02 |
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sizemeup
|
public |
A simple tool to determine the genome size of an organism
|
2024-10-02 |
