|
r-seurat-data
|
public |
Single cell RNA sequencing datasets can be large, consisting of matrices that contain expression data for several thousand features across several thousand cells. This package is designed to easily install, manage, and learn about various single-cell datasets, provided Seurat objects and distributed as independent packages.
|
2025-08-22 |
|
r-seurat-disk
|
public |
The h5Seurat file format is specifically designed for the storage and analysis of multi-modal single-cell and spatially-resolved expression experiments, for example, from CITE-seq or 10X Visium technologies. It holds all molecular information and associated metadata, including (for example) nearest-neighbor graphs, dimensional reduction information, spatial coordinates and image data, and cluster labels. We also support rapid and on-disk conversion between h5Seurat and AnnData objects, with the goal of enhancing interoperability between Seurat and Scanpy.
|
2025-08-22 |
|
bioconductor-tfbstools
|
public |
Software Package for Transcription Factor Binding Site (TFBS) Analysis.
|
2025-08-22 |
|
svclone
|
public |
Computational method for inferring cancer cell fraction of tumour SVs from WGS.
|
2025-08-22 |
|
bioconductor-cner
|
public |
CNE Detection and Visualization.
|
2025-08-22 |
|
cactus-gfa-tools
|
public |
Command-line utilitites required for the Cactus Pangenome Pipeline.
|
2025-08-22 |
|
alfred
|
public |
BAM alignment statistics, feature counting and feature annotation
|
2025-08-22 |
|
skesa
|
public |
Strategic Kmer Extension for Scrupulous Assemblies & Sequence Assembly Using Target Enrichment
|
2025-08-21 |
|
bioconductor-chromvar
|
public |
Chromatin Variation Across Regions.
|
2025-08-21 |
|
arriba
|
public |
Fast and accurate gene fusion detection from RNA-Seq data.
|
2025-08-21 |
|
wally
|
public |
Visualization of aligned sequencing reads and genomic variants.
|
2025-08-21 |
|
dnaapler
|
public |
Reorients assembled microbial sequences
|
2025-08-21 |
|
esme_esmf_psmpi_5_12_1
|
public |
ESMF - Earth System Modeling Framework
|
2025-08-21 |
|
esme_pnetcdf_psmpi_5_12_1
|
public |
PnetCDF - Parallel netCDF
|
2025-08-21 |
|
esme_netcdf-c_psmpi_5_12_1
|
public |
NetCDF-C - netCDF interface for C
|
2025-08-21 |
|
esme_hdf5_psmpi_5_12_1
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-08-21 |
|
esme_netcdf-fortran_psmpi_5_12_1
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-08-21 |
|
esme_psmpi_5_12_1
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-08-21 |
|
esme_omb_psmpi_5_12_1
|
public |
OSU Micro Benchmarks
|
2025-08-21 |
|
esme_pio_psmpi_5_12_1
|
public |
ParallelIO - High-level parallel I/O library
|
2025-08-21 |
|
gxf2bed
|
public |
Fastest GTF/GFF-to-BED converter chilling around
|
2025-08-21 |
|
btrim
|
public |
This tool is made to remove "tips" (short dead ends) from a compacted de Bruijn graph and more generally to remove sequencing errors. Used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)
|
2025-08-21 |
|
mameshiba
|
public |
mameshiba installs only the dependencies needed to run MameShiba.
|
2025-08-21 |
|
shiba
|
public |
A versatile method for systematic identification of differential RNA splicing across platforms
|
2025-08-21 |
|
hmnillumina
|
public |
A parser for Illumina run
|
2025-08-21 |
