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hanselx
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public |
A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence
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2023-06-16 |
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brockman-pipeline
|
public |
Brockman Representation Of Chromatin by K-mers in Mark-Associated Nucleotides
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2023-06-16 |
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amused
|
public |
Auditing Motifs Using Statistical Enrichment & Depletion
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2023-06-16 |
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gretel
|
public |
An algorithm for recovering haplotypes from metagenomes
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2023-06-16 |
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comparative-annotation-toolkit
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public |
A straightforward end-to-end pipeline that takes as input a HAL-format multiple whole genome alignment as well as a GFF3 file representing annotations on one high quality assembly in the HAL alignment, and produces a output GFF3 annotation on all target genomes chosen
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2023-06-16 |
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segtools
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public |
a python package for analyzing genomic segmentations
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2023-06-16 |
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assemblerflow
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public |
A Nextflow pipeline assembler for genomics. Pick your modules. Assemble them. Run the pipeline.
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2023-06-16 |
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satsuma2
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public |
FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing
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2023-06-16 |
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gblocks
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public |
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
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2023-06-16 |
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perl-perl-ostype
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public |
Map Perl operating system names to generic types
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2023-06-16 |
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fseq
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public |
F-Seq: A feature density estimator for high-throughput sequence tags
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2023-06-16 |
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libdeflate
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public |
libdeflate is a library for fast, whole-buffer DEFLATE-based compression and decompression.
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2023-06-16 |
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perl-file-tee
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public |
replicate data sent to a Perl stream
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2023-06-16 |
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perl-bio-mlst-check
|
public |
Multilocus sequence type checking using blast
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2023-06-16 |
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perl-super
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public |
control superclass method dispatch
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2023-06-16 |
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sloika
|
public |
Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling
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2023-06-16 |
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perl-file-touch
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public |
update file access and modification times, optionally creating files if needed
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2023-06-16 |
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perl-test-mockmodule
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public |
Override subroutines in a module for unit testing
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2023-06-16 |
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smoove
|
public |
structural variant calling and genotyping with existing tools, but, smoothly
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2023-06-16 |
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mamotif
|
public |
An integrative toolkit for detecting cell type-specific regulators
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2023-06-16 |
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drax
|
public |
A pipeline for Detecting Resistome Associated taXa.
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2023-06-16 |
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chromosomer
|
public |
A reference-assisted assembly tool for producing draft chromosome sequences.
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2023-06-16 |
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protk
|
public |
protk (Proteomics toolkit)
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2023-06-16 |
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mikado
|
public |
A Python3 annotation program to select the best gene model in each locus
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2023-06-16 |
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bioformats
|
public |
A collection of Python classes to handle bioinformatics data.
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2023-06-16 |
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suppa
|
public |
A tool to study splicing across multiple conditions at high speed and accuracy.
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2023-06-16 |
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tpp
|
public |
The Trans-Proteomic Pipeline (TPP) is a collection of integrated tools for MS/MS proteomics developed at the Seattle Proteome Center. The Bioconda package includes the command-line versions of the TPP toolset. These programs include tools for validation (PeptideProphet, iProphet, ProteinProphet, Mayu) and quantification (XPRESS, ASAPRatio, Libra) as well as a number of parsers and converters (Out2XML, Mascot2XML, Tandem2XML, etc).
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2023-06-16 |
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perl-findbin-libs
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public |
locate and a 'use lib' or export directories based on $FindBin::Bin.
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2023-06-16 |
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perl-module-fromperlver
|
public |
install modules compatible with the running perl.
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2023-06-16 |
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k-slam
|
public |
k-SLAM is a program for alignment based metagenomic analysis of large sets of high-throughput sequence data.
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2023-06-16 |
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adapterremovalfixprefix
|
public |
Fixes adapter removal prefixes to make sure no clashing read names are in the output.
|
2023-06-16 |
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circularmapper
|
public |
A method to improve mappings on circular genomes, using the BWA mapper.
|
2023-06-16 |
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cistrome_beta
|
public |
Binding and Expression Target Analysis of ChIP-seq TF with differential gene expression
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2023-06-16 |
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marge
|
public |
Model-based Analysis of Regulation of Gene Expression
|
2023-06-16 |
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vcf2genome
|
public |
A tool to create a draft genome file out of a GATK VCF file and enabling users to filter the VCF in a single step.
|
2023-06-16 |
|
pispino
|
public |
PISPINO (PIpits SPIN-Off tools): Bioinformatics toolkits for processing NGS data
|
2023-06-16 |
|
metagene_annotator
|
public |
MetaGeneAnnotator is a gene-finding program for prokaryote and phage
|
2023-06-16 |
|
pydnase
|
public |
DNase-seq analysis library
|
2023-06-16 |
|
snakeparse
|
public |
Making Snakemake workflows into full-fledged command line tools since 1999.
|
2023-06-16 |
|
krakenhll
|
public |
KrakenHLL metagenomics classification method with unique k-mer counting for more specific results
|
2023-06-16 |
|
downpore
|
public |
Suite of tools for use in genome assembly and consensus.
|
2023-06-16 |
|
msaboot
|
public |
Generate bootstrapping replicates for multiple sequence alignment data.
|
2023-06-16 |
|
kmerinshort
|
public |
KmerInShort counts kmers from a fasta/fastq file or list of files, and outputs results in a text file. It is limited to short kmers (k<15). It is a part of the FEELnc pipeline (V.Wucher et al.)
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2023-06-16 |
|
shmlast
|
public |
conditional reciprocal best hits with LAST
|
2023-06-16 |
|
rnasketch
|
public |
RNAsketch Library for designing RNA molecules. Glue between RNAblueprint/RNARedPrint and ViennaRNA, Nupack, Hotknots, pKiss.
|
2023-06-16 |
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perl-sys-sigaction
|
public |
Perl extension for Consistent Signal Handling
|
2023-06-16 |
|
rnablueprint
|
public |
The RNAblueprint library solves the problem of uniformly sampling RNA/DNA sequences compatible to multiple structural constraints and sequence constraints.
|
2023-06-16 |
|
pybamtools
|
public |
Tools for working on BAM data
|
2023-06-16 |
|
metacherchant
|
public |
genomic environment analysis tool
|
2023-06-16 |
|
cistrome-ceas
|
public |
Cistrome-CEAS -- Cis-regulatory Element Annotation System
|
2023-06-16 |
