| Package Name | Access | Summary | Updated |
|---|---|---|---|
| mhcgnomes | public | Python library for parsing MHC nomenclature in the wild | 2025-04-22 |
| fqtk | public | A toolkit for working with FASTQ files. | 2025-04-22 |
| psmc | public | This software package infers population size history from a diploid sequence using the Pairwise Sequentially Markovian Coalescent (PSMC) model | 2025-04-22 |
| ccphylo | public | CCPhylo enables phylogenetic analysis of samples based on overlaps between nucleotide created by e.g. KMA. Input file(s) may be given as non-option arguments succeding all options. | 2025-04-22 |
| bionumpy | public | Library for working with biological sequence data as numpy arrays. | 2025-04-22 |
| npstructures | public | Simple data structures that augments the numpy library | 2025-04-22 |
| gff2bed | public | Convert GFF3-formatted data to BED format | 2025-04-22 |
| ngs-chew | public | Simple QC and sanity checking of germline NGS data | 2025-04-22 |
| methylmap | public | Plotting tool for population-scale nucleotide modifications | 2025-04-22 |
| ufcg | public | UFCG pipeline provides methods for a genome-wide taxonomic profiling and annotation of your own biological sequences of Fungi. | 2025-04-22 |
| shorttracks | public | ShortTracks : Useful length- and strand-based coverage files (bigwig) from small RNA-seq alignments (BAM) | 2025-04-22 |
| purge-dups-runner | public | High Performance Cluster (HPC) runner. | 2025-04-22 |
| hmnrandomread | public | A sequence-read simulator program for NGS | 2025-04-22 |
| updio | public | UPDio is designed to identify uniparental disomy in probands of trio VCF data. | 2025-04-22 |
| proteomiqon-alignmentbasedquantstatistics | public | The tool ProteomIQon.AlignmentBasedQuantStatistics scores peptide ion quantifications obtained through alignment between runs. | 2025-04-22 |
| fastsimcoal2 | public | fast sequential markov coalescent simulation of genomic data under complex evolutionary models | 2025-04-22 |
| gapless | public | gapless assembly improvement tool | 2025-04-22 |
| asgal | public | A graph aligner | 2025-04-22 |
| pangu | public | CYP2D6 PGx caller for PacBio HiFi Data | 2025-04-22 |
| querynator | public | Python package to query cancer variant databases | 2025-04-22 |
| spec2vec | public | Word2Vec based similarity measure of mass spectrometry data. | 2025-04-22 |
| pynteny | public | Multiple HMM - search via synteny structures in Python | 2025-04-22 |
| perl-bio-rna-barriers | public | Parse, query and manipulate output of Barriers | 2025-04-22 |
| perl-bio-rna-barmap | public | Parse and query BarMap mappings. | 2025-04-22 |
| perl-bio-rna-treekin | public | Classes for working with Treekin output. | 2025-04-22 |
