| Package Name | Access | Summary | Updated |
|---|---|---|---|
| genomics-data-index | public | Indexes genomics data (nucleotide variants, kmers, MLST) for fast querying of features. | 2025-04-22 |
| sga_ice | public | Iterative error correction of long 250 or 300 bp Illumina reads minimizes the total amount of erroneous reads, which improves contig assembly | 2025-04-22 |
| cesar | public | CESAR 2.0 is a method to realign coding exons or genes to DNA sequences using a Hidden Markov Model | 2025-04-22 |
| forwardgenomics | public | Forward Genomics is a framework to associate phenotypic differences between species to differences in their genomes | 2025-04-22 |
| rerconverge | public | RERconverge is a set of software written in R that estimates the correlation between relative evolutionary rates of gene. | 2025-04-22 |
| rock | public | ROCK - Reducing Over-Covering K-mers | 2025-04-22 |
| strucvis | public | strucVis : Display small RNA depth of coverage on a predicted RNA secondary structure | 2025-04-22 |
| kingfisher | public | Download/extract biological FASTA/Q read data and metadata | 2025-04-22 |
| clinvar-this | public | ClinVar Submission API Made Easy. | 2025-04-22 |
| smncopynumbercaller | public | Call copy number of SMN1, SMN2, and SMN2Δ7–8 from a BAM file. | 2025-04-22 |
| gsea | public | Gene Set Enrichment Analysis (GSEA) | 2025-04-22 |
| tiny-count | public | \ A precision counting tool for hierarchical classification and quantification of small RNA-seq reads. tiny-count is part of the tinyRNA analysis pipeline. | 2025-04-22 |
| blend-bio | public | BLEND is a Fast, Memory-Efficient, and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis | 2025-04-22 |
| stare-abc | public | Calculate Gene-TF affinities via enhancer-gene interactions | 2025-04-22 |
| coverageanomalyscanner | public | Application to find local anomalies in read coverage and to predict putative SV events. | 2025-04-22 |
| pseudo-it | public | Reference-based genome assembly with iterative mapping | 2025-04-22 |
| biscot | public | Bionano SCaffolding Correction Tool | 2025-04-22 |
| gc-meox-tms | public | In-silico MeOX/TMS derivatization of chemical compounds. | 2025-04-22 |
| cherri | public | Accurate detection of functional RNA-RNA Interactions sites | 2025-04-22 |
| gorpipe | public | A query tool for working with sequence data based on a Genomic Ordered Relations (GOR) | 2025-04-22 |
| ptgaul | public | Plastid Genome Assembly Using long-read data (ptGAUL) | 2025-04-22 |
| ratatosk | public | Hybrid error correction of long reads using colored de Bruijn graphs | 2025-04-22 |
| gor_pyspark | public | Python helper function for gor-spark | 2025-04-22 |
| oncocnv | public | a package to detect copy number changes in Deep Sequencing data | 2025-04-22 |
| targetscan | public | Search for predicted microRNA targets in mammals | 2025-04-22 |
