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verkko
|
public |
A hybrid genome assembly pipeline developed for telomere-to-telomere assembly of accurate (HiFi, ONT Duplex, ONT HERRO) and long (ONT UL) reads.
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2024-10-03 |
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bactopia-teton
|
public |
Methods used by Bactopia for taxonomic classification
|
2024-10-02 |
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piper
|
public |
A lightweight python toolkit for gluing together restartable, robust command line pipelines
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2024-10-02 |
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hsdfinder
|
public |
a tool to predict highly similar duplicates (HSDs) in eukaryotes
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2024-10-02 |
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hsdecipher
|
public |
Pipeline for the downstream analysis of highly similar duplicate genes
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2024-10-02 |
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python-hivclustering
|
public |
A Python 3 library that makes inferences on HIV-1 transmission networks.
|
2024-10-01 |
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eukulele
|
public |
Easy taxonomic annotation for eukaryotic microbes.
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2024-10-01 |
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peptide-shaker
|
public |
Independent platform for interpretation of proteomics identification results.
|
2024-10-01 |
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searchgui
|
public |
User-friendly graphical tool for using proteomics identification search engines.
|
2024-10-01 |
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minimizers
|
public |
Minimizers extraction from fasta files.
|
2024-10-01 |
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olivar
|
public |
Olivar PCR tiling design
|
2024-10-01 |
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catfasta2phyml
|
public |
Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
|
2024-09-30 |
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spreadgltools
|
public |
Visualising pathogen dispersal in a high-performance browser application
|
2024-09-30 |
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agfusion
|
public |
Python package to annotate and visualize gene fusions.
|
2024-09-30 |
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snakeobjects
|
public |
Snakeobjects, an object-oriented workflow management system based on snakemake
|
2024-09-27 |
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baltic
|
public |
Lightweight package for analyzing, manipulating and visualizing annotated phylogenetic trees.
|
2024-09-27 |
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gbintk
|
public |
GraphBin-Tk: assembly graph-based metagenomic binning toolkit
|
2024-09-27 |
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giatools
|
public |
Tools required for Galaxy Image Analysis
|
2024-09-27 |
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fast-edit-distance
|
public |
A implementation of edit distance with improved runtime.
|
2024-09-27 |
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repic
|
public |
REPIC - an ensemble learning approach to cryo-EM particle picking.
|
2024-09-26 |
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gget
|
public |
gget enables efficient querying of genomic databases.
|
2024-09-26 |
|
hopla
|
public |
Hopla enables classic genomic single, duo, trio, etc., analysis, by studying a single (multisample) vcf-file
|
2024-09-26 |
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architeuthis
|
public |
Tool to analyze and summarize data for Kraken.
|
2024-09-26 |
|
biobb_structure_checking
|
public |
BioBB_structure_checking performs MDWeb structure checking set as a command line utility.
|
2024-09-26 |
|
metacoag
|
public |
MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
|
2024-09-26 |
|
graphbin2
|
public |
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
|
2024-09-26 |
|
vsnp3
|
public |
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
|
2024-09-25 |
|
hiphase
|
public |
Small and structural variant phasing tool for PacBio HiFi reads
|
2024-09-25 |
|
fiji-simple_omero_client
|
public |
Java library to simplify API to put/get objects on an OMERO server from Fiji/ImageJ.
|
2024-09-25 |
|
mview
|
public |
MView extracts and reformats the results of a sequence database search or multiple alignment.
|
2024-09-25 |
|
recentrifuge
|
public |
Robust comparative analysis and contamination removal for metagenomics
|
2024-09-25 |
|
planemo
|
public |
Command-line utilities to assist in building tools for the Galaxy project (http://galaxyproject.org/).
|
2024-09-24 |
|
msisensor-rna
|
public |
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data.
|
2024-09-24 |
|
mgatk
|
public |
Mitochondrial genome analysis toolkit.
|
2024-09-23 |
|
vembrane
|
public |
Filter VCF/BCF files with Python expressions.
|
2024-09-23 |
|
macrel
|
public |
A pipeline for AMP (antimicrobial peptide) prediction
|
2024-09-23 |
|
tooldistillator
|
public |
Tool to extract and aggregate information from different tool outputs to JSON parsable files
|
2024-09-23 |
|
reneo
|
public |
Reneo: Unraveling Viral Genomes from Metagenomes
|
2024-09-23 |
|
checkm-genome
|
public |
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
|
2024-09-23 |
|
bactopia
|
public |
Bactopia is a flexible pipeline for complete analysis of bacterial genomes.
|
2024-09-22 |
|
fastlin
|
public |
fastlin, ultra-fast MTBC lineage typing
|
2024-09-22 |
|
perl-minion
|
public |
Job queue
|
2024-09-21 |
|
recognizer
|
public |
A tool for domain based annotation with the COG database
|
2024-09-21 |
|
eukfinder
|
public |
Eukfinder is a tool for detecting eukaryotic sequences in metagenomic data.
|
2024-09-21 |
|
bactopia-qc
|
public |
The methods used in Bactopia for read QC
|
2024-09-21 |
|
percolator
|
public |
Semi-supervised learning for peptide identification from shotgun proteomics datasets.
|
2024-09-20 |
|
phylodeep
|
public |
Deep-learning parameter estimation and model selection from phylogenetic trees.
|
2024-09-20 |
|
fastq-screen
|
public |
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.
|
2024-09-20 |
|
seurat-scripts
|
public |
A set of wrappers for individual components of the Seurat package.
|
2024-09-20 |
|
busco_phylogenomics
|
public |
Utility script to construct species phylogenies using BUSCO proteins.
|
2024-09-20 |
