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bioconda / packages / bioconductor-screencounter 1.2.0

Counting Reads in High-Throughput Sequencing Screens

Installers

  • linux-64 v1.2.0
  • osx-64 v1.2.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-screencounter

Description

Provides functions for counting reads from high-throughput sequencing screen data (e.g., CRISPR, shRNA) to quantify barcode abundance. Currently supports single barcodes in single- or paired-end data, and combinatorial barcodes in paired-end data.


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