| Package Name | Access | Summary | Updated |
|---|---|---|---|
| phytest | public | Quality control for phylogenetic pipelines using pytest | 2025-04-22 |
| trimnami | public | Read-trimming pipelines for multiple samples | 2025-04-22 |
| koverage | public | Read-coverage statistics pipelines for multiple samples | 2025-04-22 |
| kosudoku | public | kosudoku: a suite to rapidly create whole genome knockout collections for microorganisms | 2025-04-22 |
| assemblycomparator2 | public | assemblycomparator2: Compare prokaryotic genomic assemblies | 2025-04-22 |
| deepdirect | public | In silico approach to generate mutations for protein complexes towards a specified direction (increase/decrease) in binding affinity. | 2025-04-22 |
| mass2chem | public | Common utilities for interpreting mass spectrometry data | 2025-04-22 |
| jms-metabolite-services | public | conversion, search of metabolic models and metabolomics data | 2025-04-22 |
| metdatamodel | public | Data models for metabolomics | 2025-04-22 |
| cascade-config | public | Cascading configuration from the CLI and config files. | 2025-04-22 |
| gogstools | public | GenOuest tools for manipulating Official Gene Sets | 2025-04-22 |
| sharg | public | A modern argument parser for C++ tools. | 2025-04-22 |
| amplisim | public | Plain simple amplicon sequence simulator for in-silico genomic sequencing assays. | 2025-04-22 |
| cospar | public | A toolkit for dynamic inference of cell fate by integrating state and lineage information. | 2025-04-22 |
| phylornn | public | PhyloRNN | 2025-04-22 |
| noise2read | public | Turn noise to read | 2025-04-22 |
| gmwi2 | public | Enhanced Health Status Prediction from Gut Microbiome Taxonomic Profiles | 2025-04-22 |
| dupsifter | public | A tool for PCR duplicate marking of WGBS (and WGS) data. | 2025-04-22 |
| decom | public | decOM: Similarity-based microbial source tracking for contamination assessment of ancient oral samples using k-mer-based methods | 2025-04-22 |
| pneumo-typer | public | Pneumo-Typer is a high-throughput capsule genotype visualization tool with integrated serotype and sequence type prediction for Streptococcus pneumoniae | 2025-04-22 |
| go-figure | public | GO-Figure! offers a simple solution for command-line plotting of informative summary visualisations of lists of GO terms, designed to support exploratory data analyses and multiple dataset comparisons. | 2025-04-22 |
| dnoise | public | Denoise sequence data sets from Illumina using distance corrected according to the entropy of each codon position | 2025-04-22 |
| r-metablastr | public | The metablastr package harnesses the power of BLAST by providing interface functions between it and R. | 2025-04-22 |
| transannot | public | TransAnnot: a fast transcriptome annotation pipeline. | 2025-04-22 |
| hifieval | public | Evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads) | 2025-04-22 |
