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radiantkit
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public |
Radiantkit is a Python package containing tools for full-stack image analysis YFISH images.
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2025-02-24 |
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wakhan
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public |
A tool to analyze haplotype-specific chromosome-scale somatic copy number aberrations and aneuploidy using long reads
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2025-02-24 |
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perl-sereal-encoder
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public |
Fast, compact, powerful binary serialization
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2025-02-24 |
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perl-sereal-decoder
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public |
Fast, compact, powerful binary deserialization
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2025-02-24 |
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neffy-cli
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public |
NEFF calculator and MSA file converter
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2025-02-24 |
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minia
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public |
Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.
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2025-02-24 |
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flumutdb
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public |
Utility module for FluMut database.
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2025-02-24 |
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baczy
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public |
Bacterial toolkit
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2025-02-24 |
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perl-bio-db-hts
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public |
Read files using HTSlib including BAM/CRAM, Tabix and BCF database files
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2025-02-24 |
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gfviewer
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public |
A bioinformatics tool for visualizing the localization of multi-gene families across the genome of a given organism.
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2025-02-24 |
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s4pred
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public |
Accurate prediction of a protein's secondary structure from its amino acid sequence
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2025-02-24 |
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hmftools-virus-interpreter
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public |
Post-process VIRUSBreakend summary results.
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2025-02-24 |
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esme_esmf_openmpi_5_0_7
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public |
ESMF - Earth System Modeling Framework
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2025-02-24 |
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esme_pnetcdf_openmpi_5_0_7
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public |
PnetCDF - Parallel netCDF
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2025-02-24 |
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esme_netcdf-c_openmpi_5_0_7
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public |
NetCDF-C - netCDF interface for C
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2025-02-24 |
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esme_omb_openmpi_5_0_7
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public |
OSU Micro Benchmarks
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2025-02-24 |
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esme_netcdf-fortran_openmpi_5_0_7
|
public |
NetCDF-Fortran - netCDF interface for Fortran
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2025-02-24 |
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esme_openmpi_5_0_7
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
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2025-02-24 |
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esme_pio_openmpi_5_0_7
|
public |
ParallelIO - High-level parallel I/O library
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2025-02-24 |
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esme_hdf5_openmpi_5_0_7
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-02-24 |
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pantools
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public |
PanTools is a pangenomic toolkit for comparative analysis of large numbers of genomes.
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2025-02-24 |
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macs3
|
public |
Model Based Analysis for ChIP-Seq data.
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2025-02-24 |
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squirrel
|
public |
Some QUIck Reconstruction to Resolve Evolutionary Links
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2025-02-24 |
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irf
|
public |
Inverted Repeats Finder is a program that detects approximate inverted repeats.
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2025-02-24 |
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seismic-rna
|
public |
SEISMIC-RNA software by the Rouskin Lab.
|
2025-02-24 |
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spades
|
public |
SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies.
|
2025-02-23 |
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taxmyphage
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public |
Script to assign taxonomy to a bacteriophage at the genus and species level
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2025-02-23 |
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annembed
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public |
annembed is an ultra-fast and scalable non-linear dimension reduction/embedding algorithm (similar to UMAP or t-SNE) for large-scale biological data
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2025-02-22 |
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seqerakit
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public |
Automate creation of Seqera Platform resources
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2025-02-22 |
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ensembl-genomio
|
public |
Ensembl GenomIO - tools to convert basic genomic data into Ensembl cores and back to flatfile
|
2025-02-21 |
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grz-cli
|
public |
Tool for validation, encryption and upload of MV submissions to GDCs.
|
2025-02-21 |
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esme_omb_openmpi_5_0_6
|
public |
OSU Micro Benchmarks
|
2025-02-21 |
|
esme_netcdf-c_openmpi_5_0_6
|
public |
NetCDF-C - netCDF interface for C
|
2025-02-21 |
|
esme_esmf_openmpi_5_0_6
|
public |
ESMF - Earth System Modeling Framework
|
2025-02-21 |
|
esme_netcdf-fortran_openmpi_5_0_6
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-02-21 |
|
esme_pio_openmpi_5_0_6
|
public |
ParallelIO - High-level parallel I/O library
|
2025-02-21 |
|
esme_openmpi_5_0_6
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-02-21 |
|
esme_pnetcdf_openmpi_5_0_6
|
public |
PnetCDF - Parallel netCDF
|
2025-02-21 |
|
esme_hdf5_openmpi_5_0_6
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-02-21 |
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ensembl-py
|
public |
Ensembl Python base library
|
2025-02-21 |
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gapseq
|
public |
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
|
2025-02-21 |
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deeplc
|
public |
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
|
2025-02-21 |
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hmftools-neo
|
public |
Identification of neoepitope and calculation of allele specific neoepitope binding and presentation likelihood.
|
2025-02-21 |
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needletail
|
public |
Fast FASTX parsing in Python
|
2025-02-21 |
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metacache
|
public |
MetaCache is a classification system for mapping genomic sequences (short reads, long reads, contigs, ...) from metagenomic samples to their most likely taxon of origin.
|
2025-02-21 |
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profile_dists
|
public |
Profile Dists: Rapid calcualtion of allele profile distances and distance base querying
|
2025-02-20 |
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mgikit
|
public |
mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
|
2025-02-20 |
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micomplete
|
public |
Quality control of assembled genomes
|
2025-02-20 |
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icfree-ml
|
public |
Design of experiments (DoE) and machine learning packages for the iCFree project
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2025-02-20 |
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scarap
|
public |
A toolkit for prokaryotic comparative genomics
|
2025-02-20 |
