| Package Name | Access | Summary | Updated |
|---|---|---|---|
| snap | public | Semi-HMM-based Nucleic Acid Parser - a gene prediction tool. | 2025-07-08 |
| fusioncatcher-seqtk | public | This is modified Seqtk version required for FusionCatcher. | 2025-07-08 |
| mantis-msi2 | public | MANTIS2 is a program developed for detecting microsatellite instability from paired-end BAM files | 2025-07-08 |
| r-rphast | public | Provides an R interface to the 'PHAST'(<http://compgen.cshl.edu/phast/>) software (Phylogenetic Analysis with Space/Time Models). It can be used for many types of analysis in comparative and evolutionary genomics, such as estimating models of evolution from sequence data, scoring alignments for conservation or acceleration, and predicting elements based on conservation or custom phylogenetic hidden Markov models. It can also perform many basic operations on multiple sequence alignments and phylogenetic trees. | 2025-07-08 |
| fqtools | public | An efficient FASTQ manipulation suite. | 2025-07-08 |
| tiberius | public | Tiberius is a deep learning gene-finder. | 2025-07-08 |
| gaas | public | Suite of tools related to Genome Assembly Annotation Service tasks at NBIS. | 2025-07-08 |
| exonerate | public | Exonerate - A generic tool for pairwise sequence comparison / alignment | 2025-07-08 |
| fwdpp | public | A C++ template library for forward-time population genetic simulation. | 2025-07-08 |
| nmslib-metabrainz | public | Non-Metric Space Library (NMSLIB). | 2025-07-07 |
| metasbt | public | Microbial genomes characterization with Sequence Bloom Trees. | 2025-07-07 |
| saffrontree | public | No Summary | 2025-07-07 |
| ncls | public | A fast interval tree-like implementation in C, wrapped for the Python ecosystem. Basically a static interval-tree that is silly fast for both construction and lookups. | 2025-07-07 |
| newmap | public | Tool for creating mappability data for reference sequences. | 2025-07-07 |
| sibeliaz | public | A fast whole-genome aligner based on de Bruijn graphs. | 2025-07-07 |
| ldblockshow | public | A tool for showing linkage disequilibrium heatmaps from variant call format (VCF) files. | 2025-07-07 |
| xengsort | public | A fast xenograft read sorter based on space-efficient k-mer hashing. | 2025-07-07 |
| wtv | public | A library and CLI for ion selection in mass spectrometry data. | 2025-07-07 |
| psosp | public | PSOSP (Prophage SOS-dependency Predictor) | 2025-07-07 |
| pathphynder | public | A workflow for ancient DNA placement into reference phylogenies. | 2025-07-07 |
| matchms | public | Python library for fuzzy comparison of mass spectrum data and other Python objects. | 2025-07-07 |
| chromhmm | public | ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. | 2025-07-07 |
| lassensus | public | Tool for creating Lassa virus consensus sequences | 2025-07-07 |
| tooldistillator | public | Tool to extract and aggregate information from different tool outputs to JSON parsable files | 2025-07-07 |
| perl-cgi | public | A generic file fetching mechanism. | 2025-07-07 |
