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genefuse
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public |
Gene fusion detection and visualization
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2025-07-24 |
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bellmans-gapc
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public |
A language and compiler for algebraic dynamic programming.
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2025-07-24 |
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plasann
|
public |
A tool for plasmid annotation and visualization.
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2025-07-24 |
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pysam
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public |
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
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2025-07-24 |
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moments
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public |
Evolutionary inference using SFS and LD statistics.
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2025-07-24 |
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star
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public |
An RNA-seq read aligner.
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2025-07-24 |
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cas-offinder
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public |
Cas-OFFinder is OpenCL based, ultrafast and versatile program that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases (RGEN).
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2025-07-24 |
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hmftools-wisp
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public |
WISP performs tumor fraction estimate for longitudinal samples
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2025-07-24 |
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fpocketr
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public |
CLI tool to find, characterize, and visualize RNA-ligand binding pockets.
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2025-07-24 |
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gecko
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public |
A pairwise genome comparison software for the detection of High-scoring Segment Pairs
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2025-07-24 |
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gctb
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public |
GCTB (Genome-wide Complex Trait Bayesian ) is a software tool that comprises a family of Bayesian linear mixed models for complex trait analyses using genome-wide SNPs.
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2025-07-24 |
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minialign
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public |
Fast and accurate alignment tool for PacBio and Nanopore long reads.
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2025-07-24 |
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minia
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public |
Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.
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2025-07-23 |
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hmftools-chord
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public |
Predict HRD using somatic mutations contexts
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2025-07-23 |
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pcdl
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public |
physicell data loader (pcdl) provides a platform independent, python3 based, pip installable interface to transform output, generated with the PhysiCell agent based modeling framework, into standard formats.
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2025-07-23 |
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ndex2
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public |
Nice CX Python includes a client and a data model.
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2025-07-23 |
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ervmancer
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public |
Quantifies HERV short read RNA sequencing expression data
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2025-07-23 |
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sylph-tax
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public |
Integrating taxonomic information into the sylph metagenome profiler.
|
2025-07-23 |
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biocode
|
public |
Bioinformatics code libraries and scripts.
|
2025-07-22 |
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rsidx
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public |
Library for indexing VCF files for random access searches by rsID.
|
2025-07-22 |
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alen
|
public |
Simple terminal sequence alignment viewer
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2025-07-22 |
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crocodeel
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public |
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
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2025-07-22 |
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agat
|
public |
Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format.
|
2025-07-22 |
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gpsw
|
public |
GPSW is a tool for analysing Global Protein Stability Profiling data.
|
2025-07-22 |
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bigwig-nim
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public |
Command-line querying+conversion of bigwigs
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2025-07-22 |
