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harpy
|
public |
Process raw haplotagging data, from raw sequences to phased haplotypes.
|
2025-01-22 |
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deeptoolsintervals
|
public |
A python module creating/accessing GTF-based interval trees with associated meta-data
|
2025-01-22 |
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emu-pca
|
public |
EM-PCA for Ultra-low Coverage Sequencing Data.
|
2025-01-22 |
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perl-socket
|
public |
networking constants and support functions
|
2025-01-22 |
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fmsi
|
public |
FMSI - memory efficient k-mer set index based on masked superstrings and Burrows-Wheeler transform.
|
2025-01-22 |
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cpstools
|
public |
CPStools is a package for analyzing chloroplast genome sequences.
|
2025-01-22 |
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whatshap
|
public |
Phase genomic variants using DNA sequencing reads (haplotype assembly).
|
2025-01-22 |
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mpra-data-access-portal
|
public |
Saturation mutagenesis MPRA data access portal.
|
2025-01-22 |
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scmidas
|
public |
A torch-based integration method for single-cell multi-omic data.
|
2025-01-22 |
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augur
|
public |
Process pathogen genome data for the Nextstrain platform.
|
2025-01-22 |
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ncbi-vdb-py
|
public |
SRA tools database engine (Python bindings).
|
2025-01-22 |
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iced
|
public |
The python module iced implements the ICE normalization of hic data.
|
2025-01-22 |
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kleborate
|
public |
Kleborate: a tool for typing and screening pathogen genome assemblies
|
2025-01-21 |
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eastr
|
public |
Tool for emending alignments of spuriously spliced transcript reads.
|
2025-01-21 |
|
aspera-cli
|
public |
Command Line Interface for IBM Aspera products.
|
2025-01-21 |
|
icfree-ml
|
public |
Design of experiments (DoE) and machine learning packages for the iCFree project
|
2025-01-21 |
|
sra-tools
|
public |
The SRA Toolkit and SDK from NCBI.
|
2025-01-21 |
|
tiddit
|
public |
TIDDIT - structural variant calling.
|
2025-01-21 |
|
py2bit
|
public |
A package for accessing 2bit files using lib2bit
|
2025-01-21 |
|
emu
|
public |
Emu is a relative abundance estimator for 16s genomic data.
|
2025-01-21 |
|
ena-upload-cli
|
public |
Command Line Interface to upload data to the European Nucleotide Archive
|
2025-01-21 |
|
crocodeel
|
public |
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
|
2025-01-21 |
|
ms2pip
|
public |
MS²PIP: MS² Peak Intensity Prediction
|
2025-01-21 |
|
virusrecom
|
public |
An information-theory-based method for recombination detection of viral lineages.
|
2025-01-21 |
|
kbo-cli
|
public |
Command-line interface for the kbo local aligner
|
2025-01-21 |
|
biobb_amber
|
public |
Biobb_amber is a BioBB category for AMBER MD package.
|
2025-01-21 |
|
ebi-eva-common-pyutils
|
public |
EBI EVA - Common Python Utilities
|
2025-01-21 |
|
biobb_haddock
|
public |
biobb_haddock is the Biobb module collection to compute information-driven flexible protein-protein docking.
|
2025-01-21 |
|
staden_io_lib
|
public |
Staden io_lib is a library of file reading and writing code e.g. for SAM/BAM/CRAM
|
2025-01-21 |
|
grepq
|
public |
Quickly filter FASTQ files
|
2025-01-21 |
|
haddock_biobb
|
public |
HADDOCK3 is the next generation integrative modelling software in the long-lasting HADDOCK project.
|
2025-01-21 |
|
linkedsv
|
public |
A novel structural variant caller for 10X Genomics (linked-read) sequencing data
|
2025-01-21 |
|
kegg-pathways-completeness
|
public |
The tool counts completeness of each KEGG pathway for protein sequences.
|
2025-01-21 |
|
psm-utils
|
public |
Common utilities for parsing and handling peptide-spectrum matches and search engine results.
|
2025-01-21 |
|
calisp
|
public |
Estimate isotopic composition of peptides from proteomics mass spectrometry data.
|
2025-01-21 |
|
psims
|
public |
Writers and controlled vocabulary manager for PSI-MS's mzML and mzIdentML standards
|
2025-01-21 |
|
pomoxis
|
public |
Assembly, consensensus, and analysis tools by ONT research
|
2025-01-21 |
|
igv
|
public |
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics
data and annotations.
|
2025-01-21 |
|
pacini_typing
|
public |
YAML-based bacterial genotyping application
|
2025-01-21 |
|
nf-core
|
public |
Python package with helper tools for the nf-core community.
|
2025-01-21 |
|
nextflow
|
public |
A DSL for data-driven computational pipelines http://nextflow.io
|
2025-01-21 |
|
vvv2_display
|
public |
Creates png image file with all [vardict] variants proportions alongside genome/assembly with annotations from [vadr].
|
2025-01-21 |
|
severus
|
public |
A tool for somatic structural variant calling using long reads
|
2025-01-21 |
|
neat
|
public |
Toolset for generating synthethic FASTQ, VCF and BAM files.
|
2025-01-21 |
|
hybracter
|
public |
An automated long-read first bacterial genome assembly pipeline.
|
2025-01-21 |
|
deeptools
|
public |
A set of user-friendly tools for normalization and visualzation of deep-sequencing data
|
2025-01-20 |
|
ms2rescore-rs
|
public |
Rust functionality for the MS²Rescore package
|
2025-01-20 |
|
foldseek
|
public |
Foldseek: fast and accurate protein structure search
|
2025-01-20 |
|
tissuumaps
|
public |
TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene expression data or any kind of point data on top of whole slide images
|
2025-01-20 |
|
poseidon-trident
|
public |
A tool (trident) to work with modular genotype databases formatted using Poseidon.
|
2025-01-20 |
