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trgt
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public |
Tandem repeat genotyping and visualization from PacBio HiFi data
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2024-11-25 |
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ucsc-bedtobigbed
|
public |
Convert bed file to bigBed. (BigBed version: 4)
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2024-11-25 |
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ensembl-vep
|
public |
Ensembl Variant Effect Predictor
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2024-11-25 |
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tipp
|
public |
TIPP: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with HiFi Data
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2024-11-25 |
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ucsc-stringify
|
public |
Convert file to C strings.
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2024-11-25 |
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ucsc-fatovcf
|
public |
Extract VCF from a multi-sequence FASTA alignment.
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2024-11-25 |
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thapbi-pict
|
public |
THAPBI Phytophthora ITS1 Classifier Tool (PICT).
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2024-11-25 |
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pycomo
|
public |
PyCoMo is a software package for generating and analysing compartmentalized community metabolic models
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2024-11-25 |
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snp2cell
|
public |
A package for finding enriched regulatory networks from GWAS and single cell data.
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2024-11-25 |
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agc
|
public |
Assembled Genomes Compressor (AGC) is a tool designed to compress collections of de-novo assembled genomes. It can be used for various types of datasets: short genomes (viruses) as well as long (humans).
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2024-11-25 |
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ngs-bits
|
public |
Short-read sequencing tools
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2024-11-25 |
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hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
|
2024-11-25 |
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cobs
|
public |
Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
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2024-11-25 |
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omamer
|
public |
OMAmer - tree-driven and alignment-free protein assignment to sub-families
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2024-11-25 |
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biobb_vs
|
public |
Biobb_vs is the Biobb module collection to perform virtual screening studies.
|
2024-11-25 |
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ntsm
|
public |
ntsm - Nucleotide Sequence/Sample Matcher
|
2024-11-25 |
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voyager
|
public |
Rapid and efficient mapping algorithm for long sequencing reads with insertion- and deletion errors.
|
2024-11-25 |
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star
|
public |
An RNA-seq read aligner.
|
2024-11-25 |
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damidseq_pipeline
|
public |
An automated pipeline for processing DamID sequencing datasets.
|
2024-11-25 |
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vgorient
|
public |
Scripts for processing mitochondrial graphs.
|
2024-11-25 |
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hmftools-sage
|
public |
SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage.
|
2024-11-25 |
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hmftools-sigs
|
public |
Fits sample SNV counts to trinucleotide signature definitions.
|
2024-11-25 |
|
hmftools-virus-interpreter
|
public |
Post-process VIRUSBreakend summary results.
|
2024-11-25 |
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hmftools-purple
|
public |
PURPLE is a purity ploidy estimator for tumor samples.
|
2024-11-25 |
|
stranger
|
public |
Annotate VCF files with STR variants with pathogenicity implications.
|
2024-11-25 |
|
straglr
|
public |
Short-tandem repeat genotyping using long reads
|
2024-11-25 |
|
gmap
|
public |
Genomic mapping and alignment program for mRNA and EST sequences.
|
2024-11-25 |
|
phyclone
|
public |
Accurate Bayesian reconstruction of cancer phylogenies from bulk sequencing.
|
2024-11-25 |
|
absense
|
public |
abSENSE: a method to interpret undetected homologs
|
2024-11-25 |
|
clinker-py
|
public |
Gene cluster comparison figure generator
|
2024-11-25 |
|
ashlar
|
public |
Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
|
2024-11-25 |
|
wipertools
|
public |
A suite of programs that drop or fix pesky lines in FASTQ files and that split FASTQ files into chunks or merge them.
|
2024-11-25 |
|
hifiadapterfilt
|
public |
Convert .bam to .fastq and remove reads with remnant PacBio HiFi adapter sequences
|
2024-11-25 |
|
bioconda-repodata-patches
|
public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2024-11-25 |
|
dysgu
|
public |
A collection of tools for calling structural variants using short or long reads
|
2024-11-24 |
|
samshee
|
public |
A schema-agnostic parser and writer for illumina sample sheets v2.
|
2024-11-24 |
|
halfdeep
|
public |
Automated detection of intervals covered at half depth by sequenced reads.
|
2024-11-23 |
|
quantms-utils
|
public |
Python package with scripts and helpers for the quantms workflow.
|
2024-11-23 |
|
genodsp
|
public |
General workbench for processing signals along genomic (chromosomal) intervals
|
2024-11-23 |
|
bbmap
|
public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
|
2024-11-23 |
|
chromap
|
public |
Fast alignment and preprocessing of chromatin profiles
|
2024-11-22 |
|
fwdpy11
|
public |
Forward-time population genetic simulation in Python.
|
2024-11-22 |
|
teloscope
|
public |
A telomere annotation tools for genome assemblies
|
2024-11-22 |
|
scspectra
|
public |
Supervised discovery of interpretable gene programs from single-cell data.
|
2024-11-22 |
|
meteor
|
public |
Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems.
|
2024-11-22 |
|
influx_si
|
public |
Metabolic flux and concentration estimation based on stable isotope labeling
|
2024-11-22 |
|
pharokka
|
public |
Fast Phage Annotation Program
|
2024-11-22 |
|
gafpack
|
public |
Convert alignments to pangenome variation graphs to coverage maps
|
2024-11-22 |
|
parsnp
|
public |
Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection.
|
2024-11-22 |
|
resistify
|
public |
A resistance gene annotation tool
|
2024-11-22 |
