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aliceasm
|
public |
Efficient HiFi genome assembler producing haplotype-separated assemblies
|
2025-03-28 |
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atlas
|
public |
ATLAS: Analysis Tools for Ancient and Low-depth Samples
|
2025-03-28 |
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vambcore
|
public |
Performant backend functions for the Vamb binning tool
|
2025-03-28 |
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nextclade
|
public |
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
|
2025-03-28 |
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civicpy
|
public |
CIViC variant knowledgebase analysis toolkit.
|
2025-03-28 |
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td2
|
public |
TD2: a tool to find protein coding regions in transcripts
|
2025-03-28 |
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ncbi-datasets-pyclient
|
public |
NCBI Datasets API
|
2025-03-28 |
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pytximport
|
public |
pytximport - gene count estimation from transcript-level quantification
|
2025-03-28 |
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vvv2_display
|
public |
Creates png image file with all [vardict] variants proportions alongside genome/assembly with annotations from [vadr].
|
2025-03-28 |
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obonet
|
public |
Parse OBO formatted ontologies into networkx
|
2025-03-28 |
|
perl-namespace-autoclean
|
public |
Keep imports out of your namespace
|
2025-03-28 |
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svtopovz
|
public |
Complex structural variant visualization for HiFi sequencing data: plotting tool.
|
2025-03-28 |
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hmftools-linx
|
public |
LINX is an annotation, interpretation and visualisation tool for structural variants.
|
2025-03-28 |
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polap
|
public |
POLAP: plant organelle long-read assembly pipeline
|
2025-03-28 |
|
taxmyphage
|
public |
Script to assign taxonomy to a bacteriophage at the genus and species level
|
2025-03-28 |
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magneto
|
public |
MAGNETO is an automated snakemake workflow dedicated to MAG reconstruction from metagenomic data.
|
2025-03-28 |
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gempipe
|
public |
gempipe is a tool for the reconstruction of strain-specific genome-scale metabolic models.
|
2025-03-28 |
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genotypy
|
public |
Automatically detect genomic barcodes integrated into loci of interest from sequencing data
|
2025-03-28 |
|
seismic-rna
|
public |
SEISMIC-RNA software by the Rouskin Lab.
|
2025-03-28 |
|
nextstrain-cli
|
public |
The Nextstrain command-line interface (CLI)
|
2025-03-28 |
|
sequenoscope
|
public |
sequenoscope is a versatile bioinformatic pipeline for the analysis of sequencing data.
|
2025-03-28 |
|
psauron
|
public |
PSAURON: a machine learning model for rapid assessment of protein coding gene annotation
|
2025-03-28 |
|
scanpy-cli
|
public |
CLI for Scanpy
|
2025-03-28 |
|
perl-math-bigint
|
public |
Arbitrary size floating point math package
|
2025-03-28 |
|
genmod
|
public |
Annotate genetic inheritance models in variant files
|
2025-03-28 |
