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r-scavenge
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public |
SCAVENGE (Single Cell Analysis of Variant Enrichment through Network propagation of GEnomic data) optimizes the inference of functional and genetic associations to specific cells at single-cell resolution.
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2025-01-01 |
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r-crisprcleanr
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public |
Analysis of CRISPR functional genomics, remove false positive due to CNVs.
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2025-01-01 |
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bioconductor-copynumberplots
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public |
Create Copy-Number Plots using karyoploteR functionality
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2025-01-01 |
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bioconductor-multicrispr
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public |
Multi-locus multi-purpose Crispr/Cas design
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2025-01-01 |
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bioconductor-regionreport
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public |
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results
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2025-01-01 |
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bioconductor-recount
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public |
Explore and download data from the recount project
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2025-01-01 |
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bioconductor-methylaiddata
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public |
MethylAid-summarized data for 2800 Illumina 450k array samples and 2620 EPIC array samples
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2025-01-01 |
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bioconductor-rnbeads
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public |
RnBeads
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2025-01-01 |
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bioconductor-lumi
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public |
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
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2025-01-01 |
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bioconductor-minfidataepic
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public |
Example data for the Illumina Methylation EPIC array
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2025-01-01 |
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bioconductor-minfidata
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public |
Example data for the Illumina Methylation 450k array
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2025-01-01 |
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bioconductor-funtoonorm
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public |
Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit
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2025-01-01 |
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bioconductor-atacseqtfea
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public |
Transcription Factor Enrichment Analysis for ATAC-seq
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2025-01-01 |
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bioconductor-pagerank
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public |
Temporal and Multiplex PageRank for Gene Regulatory Network Analysis
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2025-01-01 |
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bioconductor-epiregulon
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public |
Gene regulatory network inference from single cell epigenomic data
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2025-01-01 |
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bioconductor-ribosomeprofilingqc
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public |
Ribosome Profiling Quality Control
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2025-01-01 |
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r-gchromvar
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public |
R package for computing cell-type specific GWAS enrichments from Finemapping data and quantitative epigenomic data.
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2025-01-01 |
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bioconductor-selectksigs
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public |
Selecting the number of mutational signatures using a perplexity-based measure and cross-validation
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2025-01-01 |
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bioconductor-icnv
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public |
Integrated Copy Number Variation detection
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2025-01-01 |
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bioconductor-derfinderplot
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public |
Plotting functions for derfinder
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2025-01-01 |
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bioconductor-ga4ghshiny
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public |
Shiny application for interacting with GA4GH-based data servers
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2025-01-01 |
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bioconductor-svanumt
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public |
NUMT detection from structural variant calls
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2025-01-01 |
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bioconductor-svaretro
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public |
Retrotransposed transcript detection from structural variants
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2025-01-01 |
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gridss
|
public |
GRIDSS: the Genomic Rearrangement IDentification Software Suite
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2025-01-01 |
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bioconductor-netzoor
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public |
Unified methods for the inference and analysis of gene regulatory networks
|
2025-01-01 |
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bioconductor-genomicstate
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public |
Build and access GenomicState objects for use with derfinder tools from sources like Gencode
|
2025-01-01 |
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bioconductor-yarn
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public |
YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization
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2025-01-01 |
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bioconductor-resolve
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public |
RESOLVE: An R package for the efficient analysis of mutational signatures from cancer genomes
|
2025-01-01 |
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bioconductor-chipexoqual
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public |
ChIPexoQual
|
2025-01-01 |
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bioconductor-rqc
|
public |
Quality Control Tool for High-Throughput Sequencing Data
|
2025-01-01 |
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bioconductor-bubbletree
|
public |
BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data
|
2025-01-01 |
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bioconductor-karyoploter
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public |
Plot customizable linear genomes displaying arbitrary data
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2025-01-01 |
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orfquant
|
public |
SaTAnn is a method that annotates and quantifies translation at the single ORF level using Ribo-seq data.
|
2025-01-01 |
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bioconductor-derfinder
|
public |
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
|
2025-01-01 |
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bioconductor-vcfarray
|
public |
Representing on-disk / remote VCF files as array-like objects
|
2025-01-01 |
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bioconductor-minimumdistance
|
public |
A Package for De Novo CNV Detection in Case-Parent Trios
|
2025-01-01 |
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bioconductor-chipqc
|
public |
Quality metrics for ChIPseq data
|
2025-01-01 |
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bioconductor-inpas
|
public |
Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data
|
2025-01-01 |
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bioconductor-consensusde
|
public |
RNA-seq analysis using multiple algorithms
|
2025-01-01 |
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bioconductor-gars
|
public |
GARS: Genetic Algorithm for the identification of Robust Subsets of variables in high-dimensional and challenging datasets
|
2025-01-01 |
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bioconductor-standr
|
public |
Spatial transcriptome analyses of Nanostring's DSP data in R
|
2025-01-01 |
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bioconductor-octad
|
public |
Open Cancer TherApeutic Discovery (OCTAD)
|
2025-01-01 |
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bioconductor-scone
|
public |
Single Cell Overview of Normalized Expression data
|
2025-01-01 |
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bioconductor-methylaid
|
public |
Visual and interactive quality control of large Illumina DNA Methylation array data sets
|
2025-01-01 |
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bioconductor-flowsorted.cordblood.450k
|
public |
Illumina 450k data on sorted cord blood cells
|
2025-01-01 |
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bioconductor-deconvr
|
public |
Simulation and Deconvolution of Omic Profiles
|
2025-01-01 |
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bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19
|
public |
An annotation package for Illumina's EPIC methylation arrays.
|
2025-01-01 |
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bioconductor-quantro
|
public |
A test for when to use quantile normalization
|
2025-01-01 |
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bioconductor-shinyepico
|
public |
ShinyÉPICo
|
2025-01-01 |
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bioconductor-methylumi
|
public |
Handle Illumina methylation data
|
2025-01-01 |
