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bioconductor-readqpcr
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public |
Read qPCR data
|
2024-12-16 |
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bioconductor-help
|
public |
Tools for HELP data analysis
|
2024-12-16 |
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contatester
|
public |
Compute the Allelic Balance of a sample from a VCF file.
|
2024-12-16 |
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bioconductor-anf
|
public |
Affinity Network Fusion for Complex Patient Clustering
|
2024-12-16 |
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bioconductor-clusterstab
|
public |
Compute cluster stability scores for microarray data
|
2024-12-16 |
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perl-sanger-cgp-vcf
|
public |
a set of common perl utilities for generating consistent Vcf headers
|
2024-12-16 |
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bioconductor-dfp
|
public |
Gene Selection
|
2024-12-16 |
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bioconductor-rtca
|
public |
Open-source toolkit to analyse data from xCELLigence System (RTCA)
|
2024-12-16 |
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bioconductor-cogena
|
public |
co-expressed gene-set enrichment analysis
|
2024-12-16 |
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bioconductor-ddct
|
public |
The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)
|
2024-12-16 |
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srahunter
|
public |
srahunter is a tool for processing SRA accession numbers.
|
2024-12-16 |
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perl-bio-easel
|
public |
Perl modules and scripts for interfacing with Sean Eddy's C easel sequence analysis library using Perl's Inline.
|
2024-12-16 |
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locityper
|
public |
Targeted genotyper for complex polymorphic loci from short and long read WGS.
|
2024-12-16 |
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bioconductor-undo
|
public |
Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions
|
2024-12-16 |
|
bioconductor-biobroom
|
public |
Turn Bioconductor objects into tidy data frames
|
2024-12-16 |
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perl-inline-c
|
public |
C Language Support for Inline
|
2024-12-16 |
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perl-sub-attribute
|
public |
Reliable subroutine attribute handlers
|
2024-12-16 |
|
bioconductor-piano
|
public |
Platform for integrative analysis of omics data
|
2024-12-16 |
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perl-escape-houdini
|
public |
Perl API to Houdini, a zero-dependency C web escaping library
|
2024-12-16 |
|
perl-config-autoconf
|
public |
A module to implement some of AutoConf macros in pure perl.
|
2024-12-16 |
|
bioconductor-timecourse
|
public |
Statistical Analysis for Developmental Microarray Time Course Data
|
2024-12-16 |
|
methyldackel
|
public |
A (mostly) universal methylation extractor for BS-seq experiments. Formerly named PileOMeth.
|
2024-12-16 |
|
libsequence
|
public |
A C++ class library for evolutionary genetics.
|
2024-12-16 |
|
meme
|
public |
Motif-based sequence analysis tools.
|
2024-12-16 |
|
pycluster
|
public |
Clustering module for Python
|
2024-12-16 |
|
pindel
|
public |
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data
|
2024-12-16 |
|
bioconductor-rnaseqcovarimpute
|
public |
Impute Covariate Data in RNA Sequencing Studies
|
2024-12-16 |
|
bioconductor-cytolib
|
public |
C++ infrastructure for representing and interacting with the gated cytometry data
|
2024-12-16 |
|
perl-sanger-cgp-allelecount
|
public |
Support code for NGS copy number algorithm
|
2024-12-16 |
|
perl-datetime-locale
|
public |
Localization support for DateTime.pm
|
2024-12-16 |
|
msisensor-pro
|
public |
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
|
2024-12-16 |
|
alfred
|
public |
BAM alignment statistics, feature counting and feature annotation
|
2024-12-16 |
|
trnascan-se
|
public |
tRNA detection in large-scale genomic sequences
|
2024-12-16 |
|
phispy
|
public |
Prophage finder using multiple metrics
|
2024-12-16 |
|
rsem
|
public |
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data.
|
2024-12-16 |
|
bamcmp
|
public |
Tools for deconvolving host and graft reads using full-length alignments and their scores.
|
2024-12-16 |
|
dna-nn
|
public |
Model and predict short DNA sequence features with neural networks.
|
2024-12-16 |
|
pasa
|
public |
PASA, acronym for Program to Assemble Spliced Alignments (and pronounced 'pass-uh'), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.
|
2024-12-16 |
|
nextpolish2
|
public |
Repeat-aware polishing genomes assembled using HiFi long reads.
|
2024-12-16 |
|
namfinder
|
public |
Finds Non-overlapping Approximate Matches (NAMs) between query and reference sequences using strobemers
|
2024-12-16 |
|
bioconductor-rhdf5lib
|
public |
hdf5 library as an R package
|
2024-12-16 |
|
seshat
|
public |
Tools for programmatically annotating VCFs with the Seshat TP53 database.
|
2024-12-16 |
|
sentieon
|
public |
Accelerated performance bioinformatics tools for mapping and variant calling
|
2024-12-16 |
|
sylph
|
public |
sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI.
|
2024-12-16 |
|
ms-entropy
|
public |
This package provides a Python implementation of calculating spectral entropy, entropy similarity, and Flash entropy search for mass spectrometry data.
|
2024-12-16 |
|
purge_dups
|
public |
Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth
|
2024-12-16 |
|
edta
|
public |
Extensive de-novo TE Annotator
|
2024-12-16 |
|
bioconductor-iterativebma
|
public |
The Iterative Bayesian Model Averaging (BMA) algorithm
|
2024-12-16 |
|
bioconductor-generecommender
|
public |
A gene recommender algorithm to identify genes coexpressed with a query set of genes
|
2024-12-16 |
|
paf2chain
|
public |
convert PAF format to CHAIN format
|
2024-12-16 |
