bioconda / packages / bioconductor-ddct 1.50.0

The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.36.0
  • osx-64  v1.36.0
  • noarch  v1.50.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-ddct
conda install -c bioconda/label/gcc7 bioconductor-ddct
conda install -c bioconda/label/cf201901 bioconductor-ddct


The Delta-Delta-Ct (ddCt) Algorithm is an approximation method to determine relative gene expression with quantitative real-time PCR (qRT-PCR) experiments. Compared to other approaches, it requires no standard curve for each primer-target pair, therefore reducing the working load and yet returning accurate enough results as long as the assumptions of the amplification efficiency hold. The ddCt package implements a pipeline to collect, analyse and visualize qRT-PCR results, for example those from TaqMan SDM software, mainly using the ddCt method. The pipeline can be either invoked by a script in command-line or through the API consisting of S4-Classes, methods and functions.

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