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bioconda / packages / bioconductor-cogena 1.36.0

co-expressed gene-set enrichment analysis

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v1.14.0
  • osx-64 v1.14.0
  • noarch v1.36.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-cogena
conda install bioconda/label/cf201901::bioconductor-cogena
conda install bioconda/label/gcc7::bioconductor-cogena

Description

cogena is a workflow for co-expressed gene-set enrichment analysis. It aims to discovery smaller scale, but highly correlated cellular events that may be of great biological relevance. A novel pipeline for drug discovery and drug repositioning based on the cogena workflow is proposed. Particularly, candidate drugs can be predicted based on the gene expression of disease-related data, or other similar drugs can be identified based on the gene expression of drug-related data. Moreover, the drug mode of action can be disclosed by the associated pathway analysis. In summary, cogena is a flexible workflow for various gene set enrichment analysis for co-expressed genes, with a focus on pathway/GO analysis and drug repositioning.


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