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r-psminer
|
public |
Utilities for interacting with the pathogensurveillance pipeline.
|
2025-03-25 |
|
te-aid
|
public |
Annotation helper tool for the manual curation of transposable element consensus sequences
|
2025-03-25 |
|
lassaseq
|
public |
Tool for downloading Lassa virus sequences
|
2025-03-25 |
|
ebolaseq
|
public |
Tool for downloading and analyzing Ebola virus sequences
|
2025-03-25 |
|
snakemake-storage-plugin-sharepoint
|
public |
Snakemake storage plugin for reading and writing files on Microsoft SharePoint.
|
2025-03-25 |
|
cayman
|
public |
A command-line profiling tool for profiling CAZyme abundances in metagenomic datasets.
|
2025-03-25 |
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pvga
|
public |
PVGA is a powerful virus-focused assembler that does both assembly and polishing.
|
2025-03-25 |
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gqlib
|
public |
A gene quantification library.
|
2025-03-25 |
|
mitosalt
|
public |
MitoSAlt is a pipeline to identify large deletions and duplications in human and mouse mitochondrial genomes from next generation whole genome/exome sequencing data. The pipeline is capable of analyzing any circular genome in principle, as long as a proper configuration file is provided.
|
2025-03-25 |
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artex
|
public |
Artex - Artic pipeline extension
|
2025-03-25 |
|
metator
|
public |
Metagenomic binning based on Hi-C data.
|
2025-03-25 |
|
ctc-scite
|
public |
CTC-SCITE is a software package to infer cell lineages of single-cells and clusters of single-cells.
|
2025-03-25 |
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vpt
|
public |
Command line tool for highly parallelized processing of Vizgen data
|
2025-03-25 |
|
vpt-core
|
public |
Core components for the Vizgen Post-processing Tool
|
2025-03-25 |
|
neffy-cli
|
public |
NEFF calculator and MSA file converter
|
2025-03-25 |
|
baczy
|
public |
Bacterial toolkit
|
2025-03-25 |
|
gfviewer
|
public |
A bioinformatics tool for visualizing the localization of multi-gene families across the genome of a given organism.
|
2025-03-25 |
|
rnalyze
|
public |
A comprehensive pipeline for RNA-Seq data analysis.
|
2025-03-25 |
|
atol-bpa-datamapper
|
public |
Map data from the BPA data portal for AToL's Genome Engine.
|
2025-03-25 |
|
esme_esmf_openmpi_5_0_7
|
public |
ESMF - Earth System Modeling Framework
|
2025-03-25 |
|
esme_pnetcdf_openmpi_5_0_7
|
public |
PnetCDF - Parallel netCDF
|
2025-03-25 |
|
esme_netcdf-c_openmpi_5_0_7
|
public |
NetCDF-C - netCDF interface for C
|
2025-03-25 |
|
esme_omb_openmpi_5_0_7
|
public |
OSU Micro Benchmarks
|
2025-03-25 |
|
esme_netcdf-fortran_openmpi_5_0_7
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-03-25 |
|
esme_openmpi_5_0_7
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-03-25 |
