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r-txrevise
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public |
Construct custom transcript annotations for Salmon and kallisto
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2024-12-28 |
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bioconductor-edaseq
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public |
Exploratory Data Analysis and Normalization for RNA-Seq
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2024-12-28 |
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bioconductor-txdb.ptroglodytes.ucsc.pantro6.refgene
|
public |
Annotation package for TxDb object(s)
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2024-12-28 |
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bioconductor-txdb.athaliana.biomart.plantsmart22
|
public |
Exposes an annotation databases generated from BioMart by exposing these as TxDb objects
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2024-12-28 |
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bioconductor-bumphunter
|
public |
Bump Hunter
|
2024-12-28 |
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bioconductor-txdb.btaurus.ucsc.bostau9.refgene
|
public |
Annotation package for TxDb object(s)
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2024-12-28 |
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bioconductor-txdb.athaliana.biomart.plantsmart51
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
bioconductor-sgseq
|
public |
Splice event prediction and quantification from RNA-seq data
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2024-12-28 |
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bioconductor-cssq
|
public |
Chip-seq Signal Quantifier Pipeline
|
2024-12-28 |
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bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
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bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-txdb.cfamiliaris.ucsc.canfam5.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
bioconductor-txdb.celegans.ucsc.ce6.ensgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-fdb.ucsc.trnas
|
public |
Exposes an annotation databases generated from UCSC by exposing these as FeatureDb objects
|
2024-12-28 |
|
crux-toolkit
|
public |
A cross-platform suite of analysis tools for interpreting protein mass spectrometry data
|
2024-12-28 |
|
bioconductor-txdb.drerio.ucsc.danrer10.refgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
ngscheckmate
|
public |
Software package for identifying next generation sequencing (NGS) data files from the same individual.
|
2024-12-28 |
|
bioconductor-txdb.ggallus.ucsc.galgal5.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
perl-term-table
|
public |
Format a header and rows into a table
|
2024-12-28 |
|
bioconductor-splicinggraphs
|
public |
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
|
2024-12-28 |
|
bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-txdb.athaliana.biomart.plantsmart25
|
public |
Exposes an annotation databases generated from BioMart by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-txdb.mmusculus.ucsc.mm39.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
bioconductor-txdb.mmusculus.ucsc.mm9.knowngene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
bioconductor-txdb.hsapiens.biomart.igis
|
public |
Exposes an annotation databases generated from BioMart by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
r-immunedeconv
|
public |
collection of methods for immune cell deconvolution of bulk RNA-seq samples.
|
2024-12-28 |
|
bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
bioconductor-txdb.sscrofa.ucsc.susscr3.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
bioconductor-bindingsitefinder
|
public |
Binding site defintion based on iCLIP data
|
2024-12-28 |
|
bioconductor-txdb.cfamiliaris.ucsc.canfam6.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
bioconductor-txdb.mmusculus.ucsc.mm10.knowngene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
bioconductor-gmoviz
|
public |
Seamless visualization of complex genomic variations in GMOs and edited cell lines
|
2024-12-28 |
|
bioconductor-geneattribution
|
public |
Identification of candidate genes associated with genetic variation
|
2024-12-28 |
|
r-consensustme
|
public |
ConsensusTME is a consensus based approach to generating cancer specific gene sets for multiple cell types found within the tumour microenvironment. This package allows access to these genesets and provides a wrapper for using these gene sets with various statistical frameworks to generate normalised enrichment scores. These can be used to identify relative quantities of cell types across multiple samples.
|
2024-12-28 |
|
bioconductor-txdb.btaurus.ucsc.bostau8.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
bioconductor-guitar
|
public |
Guitar
|
2024-12-28 |
|
bioconductor-homo.sapiens
|
public |
Contains the Homo.sapiens object to access data from several related annotation packages.
|
2024-12-28 |
|
bioconductor-tress
|
public |
Toolbox for mRNA epigenetics sequencing analysis
|
2024-12-28 |
|
bioconductor-hicdcplus
|
public |
Hi-C Direct Caller Plus
|
2024-12-28 |
|
bioconductor-cpvsnp
|
public |
Gene set analysis methods for SNP association p-values that lie in genes in given gene sets
|
2024-12-28 |
|
bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-ivas
|
public |
Identification of genetic Variants affecting Alternative Splicing
|
2024-12-28 |
|
bioconductor-cytopipelinegui
|
public |
GUI's for visualization of flow cytometry data analysis pipelines
|
2024-12-28 |
|
bioconductor-variantannotation
|
public |
Annotation of Genetic Variants
|
2024-12-28 |
|
bioconductor-cytomds
|
public |
Low Dimensions projection of cytometry samples
|
2024-12-28 |
|
bioconductor-casper
|
public |
Characterization of Alternative Splicing based on Paired-End Reads
|
2024-12-28 |
|
bioconductor-phenotest
|
public |
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.
|
2024-12-28 |
