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flexiformatter
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public |
Moving flexiplex barcode and UMI to bam tags
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2025-04-22 |
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svision-pro
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public |
Neural-network-based long-read SV caller.
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2025-04-22 |
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svtopovz
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public |
Complex structural variant visualization for HiFi sequencing data: plotting tool.
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2025-04-22 |
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ggcat
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public |
Compacted and colored de Bruijn graph construction and querying.
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2025-04-22 |
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steamboat
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public |
A collection of tools/scripts for microbial bioinformatics
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2025-04-22 |
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mikrokondo-tools
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public |
A collection of utilities to make using the mikrokondo pipeline easier
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2025-04-22 |
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pegas
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public |
PeGAS is a Snakemake pipeline for genome analysis
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2025-04-22 |
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pykofamsearch
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public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
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2025-04-22 |
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r-saccharis
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public |
A rendering package for creating phylogenetic trees from SACCHARIS .json and .tree files, in the R statistical computing language.
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2025-04-22 |
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zamp
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public |
zAMP: bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
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2025-04-22 |
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genodsp
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public |
General workbench for processing signals along genomic (chromosomal) intervals
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2025-04-22 |
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telosearchlr
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public |
TeloSearchLR (telomere search using long sequencing reads) is a Python script for aiding the identificaiton of telomeric repeat motifs.
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2025-04-22 |
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snipe
|
public |
SRA-Scale sequence QC and analysis
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2025-04-22 |
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pyhmmsearch
|
public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
|
2025-04-22 |
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splash
|
public |
Unsupervised and reference-free unifying framework to discover regulated sequence variation through statistical analysis of k-mer composition in both DNA and RNA sequence.
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2025-04-22 |
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fastplong
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public |
Ultra-fast preprocessing and quality control for long-read sequencing data.
|
2025-04-22 |
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gene-trajectory-python
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public |
Compute gene trajectories
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2025-04-22 |
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inmoose
|
public |
InMoose is the Integrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
|
2025-04-22 |
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cloudspades
|
public |
A module of the SPAdes assembler aimed at genome assembly from linked read technologies (10x, Tellseq, Haplotagging).
|
2025-04-22 |
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vclust
|
public |
Fast and accurate tool for calculating ANI and clustering virus genomes and metagenomes.
|
2025-04-22 |
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fmsi
|
public |
FMSI - memory efficient k-mer set index based on masked superstrings and Burrows-Wheeler transform.
|
2025-04-22 |
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r-chromvarmotifs
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public |
Stores several motifs as PWMatrixList objects for use in R with packages like motifmatchr and chromVAR.
|
2025-04-22 |
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r-archr
|
public |
This package is designed to streamline scATAC analyses in R.
|
2025-04-22 |
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longcallr_nn
|
public |
longcallR_nn is a variant caller specifically designed for long-read RNA-seq data utilizing a ResNet model.
|
2025-04-22 |
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gafpack
|
public |
Convert alignments to pangenome variation graphs to coverage maps
|
2025-04-22 |
