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bioconductor-regioner
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public |
Association analysis of genomic regions based on permutation tests
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2024-12-30 |
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bioconductor-bsgenomeforge
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public |
Forge your own BSgenome data package
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2024-12-30 |
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bioconductor-bsgenome.celegans.ucsc.ce11
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public |
Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce11, Feb. 2013) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-gcapc
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public |
GC Aware Peak Caller
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2024-12-30 |
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bioconductor-bsgenome.ptroglodytes.ucsc.pantro3
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public |
Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro3, Oct. 2010) and stored in Biostrings objects.
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2024-12-30 |
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bioconductor-bsgenome.mfascicularis.ncbi.6.0
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public |
Full genome sequences for Macaca fascicularis (Macaca_fascicularis_6.0)
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2024-12-30 |
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bioconductor-bsgenome.ppaniscus.ucsc.panpan2
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public |
Full genome sequences for Pan paniscus (UCSC version panPan2)
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2024-12-30 |
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bioconductor-bsgenome.dvirilis.ensembl.dvircaf1
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public |
Full genome sequences for Drosophila virilis (assembly dvir_caf1)
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2024-12-30 |
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bioconductor-varcon
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public |
VarCon: an R package for retrieving neighboring nucleotides of an SNV
|
2024-12-30 |
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bioconductor-bsgenome.ppaniscus.ucsc.panpan1
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public |
Full genome sequences for Pan paniscus (UCSC version panPan1)
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2024-12-30 |
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bioconductor-bsgenome.celegans.ucsc.ce6
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public |
Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.amellifera.beebase.assembly4
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public |
iFull genome sequences for Apis mellifera (Honey Bee) as provided by BeeBase (assembly4, Feb. 2008) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.ptroglodytes.ucsc.pantro5
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public |
Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro5, May 2016) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.hsapiens.1000genomes.hs37d5
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public |
1000genomes Phase2 Reference Genome Sequence (hs37d5), based on NCBI GRCh37.
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2024-12-30 |
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bioconductor-bsgenome.btaurus.ucsc.bostau8
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public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau8, Jun. 2014) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.hsapiens.ucsc.hg38
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public |
Full genomic sequences for Homo sapiens (UCSC genome hg38)
|
2024-12-30 |
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bioconductor-bsgenome.drerio.ucsc.danrer10
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public |
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer10, Sep. 2014) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.drerio.ucsc.danrer5
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public |
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.dmelanogaster.ucsc.dm3
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public |
Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, Apr. 2006) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.mmusculus.ucsc.mm10
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public |
Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)
|
2024-12-30 |
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bioconductor-bsgenome.mmulatta.ucsc.rhemac10
|
public |
Full genome sequences for Macaca mulatta (UCSC version rheMac10)
|
2024-12-29 |
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bioconductor-bsgenome.mmulatta.ucsc.rhemac8
|
public |
Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac8, Nov. 2015) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-bsgenome.vvinifera.urgi.iggp12xv2
|
public |
Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 12Xv2) and available at the URGI (INRA)
|
2024-12-29 |
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bioconductor-bsgenome.scerevisiae.ucsc.saccer3
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public |
Saccharomyces cerevisiae (Yeast) full genome as provided by UCSC (sacCer3, April 2011) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-bsgenome.btaurus.ucsc.bostau6
|
public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau6, Nov. 2009) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-bsgenome.tguttata.ucsc.taegut1
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public |
Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut1, Jul. 2008) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-bsgenome.mmusculus.ucsc.mm39
|
public |
Full genome sequences for Mus musculus (UCSC genome mm39, based on GRCm39)
|
2024-12-29 |
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bioconductor-crisprshiny
|
public |
Exploring curated CRISPR gRNAs via Shiny
|
2024-12-29 |
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bioconductor-bsgenome.sscrofa.ucsc.susscr11
|
public |
Full genome sequences for Sus scrofa (Pig) as provided by UCSC (susScr11, Feb. 2017) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-crisprverse
|
public |
Easily install and load the crisprVerse ecosystem for CRISPR gRNA design
|
2024-12-29 |
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bioconductor-bsgenome.tguttata.ucsc.taegut2
|
public |
Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut2, Feb. 2013) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-crisprviz
|
public |
Visualization Functions for CRISPR gRNAs
|
2024-12-29 |
|
bioconductor-bsgenome.gaculeatus.ucsc.gasacu1
|
public |
Full genome sequences for Gasterosteus aculeatus (Stickleback) as provided by UCSC (gasAcu1, Feb. 2006) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-crisprdesign
|
public |
Comprehensive design of CRISPR gRNAs for nucleases and base editors
|
2024-12-29 |
|
bioconductor-bsgenome.cjacchus.ucsc.caljac4
|
public |
Full genome sequences for Callithrix jacchus (UCSC version calJac4)
|
2024-12-29 |
|
bioconductor-bsgenome.ecoli.ncbi.20080805
|
public |
Escherichia coli full genomes for several strains as provided by NCBI on 2008/08/05 and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-biovizbase
|
public |
Basic graphic utilities for visualization of genomic data.
|
2024-12-29 |
|
bioconductor-methylkit
|
public |
DNA methylation analysis from high-throughput bisulfite sequencing results
|
2024-12-29 |
|
bioconductor-qsea
|
public |
IP-seq data analysis and vizualization
|
2024-12-29 |
|
bioconductor-bsgenome.scerevisiae.ucsc.saccer2
|
public |
Saccharomyces cerevisiae (Yeast) full genome as provided by UCSC (sacCer2, June 2008) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-bsgenome.mmulatta.ucsc.rhemac2
|
public |
Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac2, Jan. 2006) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38
|
public |
Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh38 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).
|
2024-12-29 |
|
bioconductor-bsgenome.aofficinalis.ncbi.v1
|
public |
Full genome sequences for Asparagus officinalis (Garden asparagus) as provided by NCBI (Aspof.V1, Feb. 2017) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-bsgenome.hsapiens.ucsc.hg18
|
public |
Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg18, Mar. 2006) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-snplocs.hsapiens.dbsnp150.grch38
|
public |
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 150. The source data files used for this package were created by NCBI between March 12-14, 2017, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.
|
2024-12-29 |
|
bioconductor-methrix
|
public |
Fast and efficient summarization of generic bedGraph files from Bisufite sequencing
|
2024-12-29 |
|
bioconductor-bsgenome.osativa.msu.msu7
|
public |
Oryza sativa full genome (MSU7)
|
2024-12-29 |
|
bioconductor-bsgenome.celegans.ucsc.ce2
|
public |
Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce2, Mar. 2004) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-bsgenome.creinhardtii.jgi.v5.6
|
public |
Full genome sequences for Chlamydomonas reinhardtii (v5.6)
|
2024-12-29 |
|
bioconductor-bsgenome.hsapiens.ucsc.hs1
|
public |
Full genomic sequences for UCSC genome hs1 (Homo sapiens)
|
2024-12-29 |
