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bam2fasta
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public |
bam2fasta: cli tool to convert bam to fastas
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2023-06-16 |
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bioconductor-crossicc
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public |
An Interactive Consensus Clustering Framework for Multi-platform Data Analysis
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2023-06-16 |
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bioconductor-flowspy
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public |
A Toolkit for Flow And Mass Cytometry Data
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2023-06-16 |
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bioconductor-hcaexplorer
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public |
Browse the Human Cell Atlas data portal
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2023-06-16 |
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r-eacon
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public |
Easy Copy Number. EaCoN aims to be an all-packed in, user-friendly solution to perform relative or absolute copy-number analysis for multiple sources of data, with three different segmenters available (and corresponding three copy-number modelization methods)
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2023-06-16 |
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perl-obogaf-parser
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public |
a perl5 module to handle obo and gaf file
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2023-06-16 |
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rilseq
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public |
Processing RILSeq experiments results
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2023-06-16 |
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vibrant
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public |
Virus Identification By iteRative ANnoTation
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2023-06-16 |
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optimir
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public |
Integrating genetic variations in miRNA alignment
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2023-06-16 |
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biasaway
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public |
BiasAway: a tool to generate composition-matched background sequences
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2023-06-16 |
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variant_tools
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public |
Integrated annotation and analysis of next gen sequencing data
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2023-06-16 |
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count_constant_sites
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public |
Compute the count of cases in constant sites in a (FASTA) multiple sequence alignment
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2023-06-16 |
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clsify
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public |
Haplotyping of C. Liberibacter solanacearum from Sanger data.
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2023-06-16 |
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mango
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public |
A scalable genomic visualization tool
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2023-06-16 |
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tetyper
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public |
Typing of a specific transposable element (TE) of interest from paired-end sequencing data.
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2023-06-16 |
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graph-boink
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public |
streaming de Bruijn graph compaction and sketching.
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2023-06-16 |
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jpredapi
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public |
Python library for submitting jobs to JPRED - A Protein Secondary Structure Prediction Server
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2023-06-16 |
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kmasker
|
public |
A tool for masking and exploring of sequences from plant species.
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2023-06-16 |
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danpos
|
public |
A toolkit for Dynamic Analysis of Nucleosome and Protein Occupancy by Sequencing, version 2
|
2023-06-16 |
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decoypyrat
|
public |
Fast Hybrid Decoy Sequence Database Creation for Proteomic Mass Spectrometery Analyses
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2023-06-16 |
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bwise
|
public |
BWISE is a de Bruijn assembly Workflow using Integral information of Short paired-End reads
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2023-06-16 |
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croo
|
public |
CRomwell Output Organizer
|
2023-06-16 |
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popscle
|
public |
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
|
2023-06-16 |
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bel-resources
|
public |
Utilities for BEL resource files.
|
2023-06-16 |
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caper
|
public |
Cromwell Assisted Pipeline ExecutoR
|
2023-06-16 |
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chromatiblock
|
public |
Scalable, whole-genome visualisation of structural changes in prokaryotes.
|
2023-06-16 |
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fastalite
|
public |
Simplest possible fasta parser
|
2023-06-16 |
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req
|
public |
Estimating the rate of elementary quartets (REQ) of each internal branch of a phylogenetic tree from a distance matrix
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2023-06-16 |
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rmetl
|
public |
rMETL is a realignment-based Mobile Element insertion detection Tool for Long read
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2023-06-16 |
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chexmix
|
public |
ChExMix aims to characterize protein-DNA binding subtypes in ChIP-exo experiments. ChExMix assumes that different regulatory complexes will result in different protein-DNA crosslinking signatures in ChIP-exo data, and thus analysis of ChIP-exo sequencing tag patterns should enable detection of multiple protein-DNA binding modes for a given regulatory protein. ChExMix uses a mixture modeling framework to probabilistically model the genomic locations and subtype membership of protein-DNA binding events, leveraging both ChIP-exo tag enrichment patterns and DNA sequence information. In doing so, ChExMix offers a more principled and robust approach to characterizing binding subtypes than simply clustering binding events using motif information.
|
2023-06-16 |
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cvbio
|
public |
Tools for working with genomic and sequencing data, including multi-species read disambiguation
|
2023-06-16 |
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jass_preprocessing
|
public |
Harmonizing raw GWAS summary statistic for further analysis with jass
|
2023-06-16 |
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ratt
|
public |
Rapid Annotation Transfer Tool
|
2023-06-16 |
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multivcfanalyzer
|
public |
MultiVCFAnalyzer is a VCF file post-processing tool tailored for aDNA. License on Github repository.
|
2023-06-16 |
|
pirate
|
public |
Pangenome analysis and threshold evaluation toolbox
|
2023-06-16 |
|
quasirecomb
|
public |
Software of Inference of Quasispecies subjected to Recombination
|
2023-06-16 |
|
flextaxd
|
public |
Script that allows the creation of custom kraken databases from various sources (NCBI, QIIME, CanSNPer)
|
2023-06-16 |
|
whatsgnu
|
public |
WhatsGNU A Tool For Identifying Proteomic Novelty
|
2023-06-16 |
|
biowdl-input-converter
|
public |
Converting various input formats into WDL structs for BioWDL pipelines.
|
2023-06-16 |
|
cigar
|
public |
manipulate SAM cigar strings
|
2023-06-16 |
|
seacr
|
public |
SEACR is intended to call peaks and enriched regions from sparse CUT&RUN or chromatin profiling data in which background is dominated by "zeroes" (i.e. regions with no read coverage). It requires R (https://www.r-project.org) and Bedtools (https://bedtools.readthedocs.io/en/latest/) to be available in your path, and it requires bedgraphs from paired-end sequencing as input, which can be generated from read pair BED files (i.e. BED coordinates reflecting the 5' and 3' termini of each read pair) using bedtools genomecov with the "-bg" flag, or alternatively from name-sorted paired-end BAM files as described in "Preparing input bedgraph files" below.
|
2023-06-16 |
|
mavis
|
public |
A Structural Variant Post-Processing Package
|
2023-06-16 |
|
perl-data-lock
|
public |
makes variables (im)?mutable
|
2023-06-16 |
|
primerclip
|
public |
Swift Accel-Amplicon primer trimming tool for fast alignment-based primer trimming
|
2023-06-16 |
|
samstats
|
public |
SAM file alignment statistics at the read level
|
2023-06-16 |
|
encyclopedia
|
public |
EncyclopeDIA is library search engine comprised of several algorithms for DIA data analysis
|
2023-06-16 |
|
perl-http-tiny
|
public |
A small, simple, correct HTTP/1.1 client
|
2023-06-16 |
|
vpolo
|
public |
Support package for Alevin tools
|
2023-06-16 |
|
patholive
|
public |
A real-time pathogen diagnostics tool for metagenomic Illumina sequencing data.
|
2023-06-16 |
|
tagore
|
public |
A simple way to visualize features on human chromosome ideograms
|
2023-06-16 |
