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bioconda / packages / count_constant_sites 0.1.1

Compute the count of cases in constant sites in a (FASTA) multiple sequence alignment

Installers

  • osx-64 v0.1.1
  • linux-64 v0.1.1

conda install

To install this package run one of the following:
conda install bioconda::count_constant_sites

Description

Given a FASTA file with a multiple sequence alignment of nucleotides, this tool counts the sites in the alignment that are constant. The output is a line suitable for use in IQTREE's -fconst, thus 4 numbers with commas expressing the count of As, Cs, Gs and Ts.


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