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omssa
|
public |
Open Mass Spectrometry Search Algorithm (OMSSA)
|
2023-06-16 |
|
scpred-cli
|
public |
A set of command-line wrappers for the core functions in the scPred package.
|
2023-06-16 |
|
fastml
|
public |
FastML is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences
|
2023-06-16 |
|
perl-ensembl-api
|
public |
The Ensembl Core Perl API and
|
2023-06-16 |
|
perl-ensembl-variation
|
public |
The Ensembl Core Perl API and
|
2023-06-16 |
|
perl-data-predicate
|
public |
Predicates are a way of composing logic so it eventually reports a true/false for a given value
|
2023-06-16 |
|
perl-ensembl-core
|
public |
The Ensembl Core Perl API and
|
2023-06-16 |
|
phyphy
|
public |
Facilitating the execution and parsing of standard HyPhy (>=2.3.7) analyses
|
2023-06-16 |
|
vcontact2
|
public |
Viral Contig Automatic Clustering and Taxonomy
|
2023-06-16 |
|
perl-ensembl-io
|
public |
The Ensembl Core Perl API and
|
2023-06-16 |
|
perl-ensembl-funcgen
|
public |
The Ensembl Core Perl API and
|
2023-06-16 |
|
array-as-vcf
|
public |
Convert SNP array to VCF
|
2023-06-16 |
|
perl-ensembl-genomes
|
public |
The Ensembl Core Perl API and
|
2023-06-16 |
|
perl-ensembl-compara
|
public |
The Ensembl Core Perl API and
|
2023-06-16 |
|
genie
|
public |
A toolkit for working with next-generation sequencing data
|
2023-06-16 |
|
lyner
|
public |
A chaining toolbox for working with dataframes
|
2023-06-16 |
|
schicexplorer
|
public |
Set of programs to process, analyze and visualize single-cell Hi-C data.
|
2023-06-16 |
|
popera
|
public |
A software for DNase I hypersensitive sites identification.
|
2023-06-16 |
|
perl-bio-das
|
public |
Client-side library for Distributed Genome Annotation System
|
2023-06-16 |
|
r-prestor
|
public |
A prototype package for generating quality control plots from pRESTO output.
|
2023-06-16 |
|
pyomero-upload
|
public |
Client library offering helper methods to upload data to an OMERO server.
|
2023-06-16 |
|
pretext-suite
|
public |
Meta-package for Pretext Hi-C contact map tools.
|
2023-06-16 |
|
perl-util-properties
|
public |
Java.util.properties like class
|
2023-06-16 |
|
perl-lockfile-simple
|
public |
simple file locking scheme
|
2023-06-16 |
|
perl-rest-client
|
public |
A simple client for interacting with RESTful http/https resources
|
2023-06-16 |
|
rucs
|
public |
RUCS is a bioinformatics tool developed to ease the task of designing new primers.
|
2023-06-16 |
|
wade
|
public |
WADE provides a flexible and customizable method to extract specific genes from a large number of genomes at once.
|
2023-06-16 |
|
perl-email-simple
|
public |
simple parsing of RFC2822 message format and headers
|
2023-06-16 |
|
r-metaboanalyst
|
public |
MetaboAnalystR 2.0 contains the R functions and libraries underlying the popular MetaboAnalyst web server.
|
2023-06-16 |
|
ldsc
|
public |
ldsc is a tool for estimating heritability and genetic correlation from GWAS summary statistics. It also computes LD Scores.
|
2023-06-16 |
|
snaptools
|
public |
A module for working with snap files in Python
|
2023-06-16 |
|
iucn_sim
|
public |
Simulate future extinctions and extinction rates for a given set of species, based on IUCN threat assessments
|
2023-06-16 |
|
transrate
|
public |
Reference free quality assessment of de-novo transcriptome assemblies
|
2023-06-16 |
|
clair
|
public |
Single-molecule sequencing technologies have emerged in recent years and revolutionized structural variant calling, complex genome assembly, and epigenetic mark detection. However, the lack of a highly accurate small variant caller has limited the new technologies from being more widely used. In this study, we present Clair, the successor to Clairvoyante, a program for fast and accurate germline small variant calling, using single molecule sequencing data. For ONT data, Clair achieves the best precision, recall and speed as compared to several competing programs, including Clairvoyante, Longshot and Medaka. Through studying the missed variants and benchmarking intentionally overfitted models, we found that Clair may be approaching the limit of possible accuracy for germline small variant calling using pileup data and deep neural networks.
|
2023-06-16 |
|
translig
|
public |
A de novo transcriptome assembler that uses line graph iteration
|
2023-06-16 |
|
refgenie
|
public |
Refgenie creates a standardized folder structure for reference genome files and indexes. You can download pre-built genomes or build your own for any fasta file
|
2023-06-16 |
|
ggd
|
public |
GoGetData (GGD) is a genomic data managment system. It provide simple and reproducible access to a repository of genomic data. Simply put, it is 'Conda' for genomic data
|
2023-06-16 |
|
bioconductor-gramm4r
|
public |
Generalized correlation analysis and model construction strategy for metabolome and microbiome
|
2023-06-16 |
|
bioconductor-sojourner
|
public |
Statistical analysis of single molecule trajectories
|
2023-06-16 |
|
garnett-cli
|
public |
Collection of wrapper scripts for the Garnett scRNAseq cell type classification tool.
|
2023-06-16 |
|
bioconductor-aspediafi
|
public |
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events
|
2023-06-16 |
|
ncbi-acc-download
|
public |
Download files from NCBI Entrez by accession.
|
2023-06-16 |
|
refgenconf
|
public |
A standardized configuration object for reference genome assemblies
|
2023-06-16 |
|
bioconductor-alps
|
public |
AnaLysis routines for ePigenomicS data
|
2023-06-16 |
|
borf
|
public |
ORF predictions from .fa files
|
2023-06-16 |
|
bioconductor-methcp
|
public |
Differential methylation anlsysis for bisulfite sequencing data
|
2023-06-16 |
|
pb-falcon-phase
|
public |
Non-python parts of falcon-phase (Pacific Biosciences)
|
2023-06-16 |
|
bioconductor-xcir
|
public |
XCI-inference
|
2023-06-16 |
|
bioconductor-autotuner
|
public |
Automated parameter selection for untargeted metabolomics data processing
|
2023-06-16 |
|
bioconductor-pulsedsilac
|
public |
Analysis of pulsed-SILAC quantitative proteomics data
|
2023-06-16 |
