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bioconductor-mageckflute
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public |
Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens
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2025-04-22 |
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bioconductor-expressionview
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public |
Visualize biclusters identified in gene expression data
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2025-04-22 |
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bioconductor-eisa
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public |
Expression data analysis via the Iterative Signature Algorithm
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2025-04-22 |
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bioconductor-singscore
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public |
Rank-based single-sample gene set scoring method
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2025-04-22 |
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bioconductor-rcistarget
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public |
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions
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2025-04-22 |
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bioconductor-countsimqc
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public |
Compare Characteristic Features of Count Data Sets
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2025-04-22 |
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bioconductor-bloodcancermultiomics2017
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public |
"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis
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2025-04-22 |
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bioconductor-mogsa
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public |
Multiple omics data integrative clustering and gene set analysis
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2025-04-22 |
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bioconductor-gsvadata
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public |
Data employed in the vignette of the GSVA package
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2025-04-22 |
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bioconductor-gcmapweb
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public |
A web interface for gene-set enrichment analyses
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2025-04-22 |
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bioconductor-gcmap
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public |
Tools for Connectivity Map-like analyses
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2025-04-22 |
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bioconductor-meshr
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public |
Tools for conducting enrichment analysis of MeSH
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2025-04-22 |
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bioconductor-attract
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public |
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
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2025-04-22 |
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bioconductor-timeseriesexperiment
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public |
Analysis for short time-series data
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2025-04-22 |
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bioconductor-coseq
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public |
Co-Expression Analysis of Sequencing Data
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2025-04-22 |
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bioconductor-cemitool
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public |
Co-expression Modules identification Tool
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2025-04-22 |
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bioconductor-biocor
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public |
Functional similarities
|
2025-04-22 |
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bioconductor-aucell
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public |
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
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2025-04-22 |
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bioconductor-rrbsdata
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public |
An RRBS data set with 12 samples and 10,000 simulated DMRs
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2025-04-22 |
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bioconductor-outrider
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public |
OUTRIDER - OUTlier in RNA-Seq fInDER
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2025-04-22 |
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bioconductor-desubs
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public |
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
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2025-04-22 |
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bioconductor-omicrexposome
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public |
Exposome and omic data associatin and integration analysis
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2025-04-22 |
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r-htscluster
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public |
A Poisson mixture model is implemented to cluster genes from high- throughput transcriptome sequencing (RNA-seq) data. Parameter estimation is performed using either the EM or CEM algorithm, and the slope heuristics are used for model selection (i.e., to choose the number of clusters).
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2025-04-22 |
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r-isva
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public |
Independent Surrogate Variable Analysis is an algorithm for feature selection in the presence of potential confounding factors (see Teschendorff AE et al 2011, <doi: 10.1093/bioinformatics/btr171>).
|
2025-04-22 |
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r-nbpseq
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public |
Negative Binomial (NB) models for two-group comparisons and regression inferences from RNA-Sequencing Data.
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2025-04-22 |
