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bioconductor-vulcan

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VirtUaL ChIP-Seq data Analysis using Networks

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-vulcan

Usage Tracking

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Description

Vulcan (VirtUaL ChIP-Seq Analysis through Networks) is a package that interrogates gene regulatory networks to infer cofactors significantly enriched in a differential binding signature coming from ChIP-Seq data. In order to do so, our package combines strategies from different BioConductor packages: DESeq for data normalization, ChIPpeakAnno and DiffBind for annotation and definition of ChIP-Seq genomic peaks, csaw to define optimal peak width and viper for applying a regulatory network over a differential binding signature.

About

Summary

VirtUaL ChIP-Seq data Analysis using Networks

Last Updated

Jan 4, 2025 at 16:26

License

LGPL-3

Total Downloads

20.5K

Supported Platforms

noarch