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bioconductor-plpe
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public |
Local Pooled Error Test for Differential Expression with Paired High-throughput Data
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2025-04-22 |
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bioconductor-lpe
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public |
Methods for analyzing microarray data using Local Pooled Error (LPE) method
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2025-04-22 |
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bioconductor-philr
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public |
Phylogenetic partitioning based ILR transform for metagenomics data
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2025-04-22 |
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bioconductor-pbcmc
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public |
The pbcmc package characterizes uncertainty assessment on gene expression classifiers, a. k. a. molecular signatures, based on a permutation test. In order to achieve this goal, synthetic simulated subjects are obtained by permutations of gene labels. Then, each synthetic subject is tested against the corresponding subtype classifier to build the null distribution. Thus, classification confidence measurement can be provided for each subject, to assist physician therapy choice. At present, it is only available for PAM50 implementation in genefu package but it can easily be extend to other molecular signatures.
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2025-04-22 |
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bioconductor-generegionscan
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public |
GeneRegionScan
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2025-04-22 |
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bioconductor-proteomicsannotationhubdata
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public |
Transform public proteomics data resources into Bioconductor Data Structures
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2025-04-22 |
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bioconductor-annotationhubdata
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public |
Transform public data resources into Bioconductor Data Structures
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2025-04-22 |
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bioconductor-prot2d
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public |
The purpose of this package is to analyze (i.e. Normalize and select significant spots) data issued from 2D GEl experiments
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2025-04-22 |
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bioconductor-process
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public |
Ciphergen SELDI-TOF Processing
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2025-04-22 |
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bioconductor-pwomics
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public |
Pathway-based data integration of omics data
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2025-04-22 |
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bioconductor-icens
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public |
NPMLE for Censored and Truncated Data
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2025-04-22 |
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bioconductor-psygenet2r
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public |
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
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2025-04-22 |
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bioconductor-regsplice
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public |
L1-regularization based methods for detection of differential splicing
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2025-04-22 |
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epicseg
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public |
EpiCSeg (Epigenome Count-based Segmentation) is a software for annotating the genome based on the state of the chromatin. It provides tools for extracting count data from BAM files, typlically corresponding to ChIP-seq experiments for histone marks (but other choices are possible) it learns a statistical model for the read counts based on a HMM, it annotates the genome, and it provides tools for displaying and analyzing the obtained models and segmentations. EpiCSeg can be used as an R package or from the command line via Rscript.
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2025-04-22 |
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bis-snp-utils
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public |
bis-snp-utils are support tools for Bis-SNP
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2025-04-22 |
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bioconductor-a4base
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public |
Automated Affymetrix Array Analysis Base Package
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2025-04-22 |
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bioconductor-a4reporting
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public |
Automated Affymetrix Array Analysis Reporting Package
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2025-04-22 |
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bioconductor-refplus
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public |
A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.
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2025-04-22 |
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bioconductor-ggtools
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public |
software and data for analyses in genetics of gene expression
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2025-04-22 |
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bioconductor-ggbase
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public |
GGBase infrastructure for genetics of gene expression package GGtools
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2025-04-22 |
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bioconductor-gewist
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public |
Gene Environment Wide Interaction Search Threshold
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2025-04-22 |
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bioconductor-globalancova
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public |
Global test for groups of variables via model comparisons
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2025-04-22 |
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bioconductor-gmrp
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public |
GWAS-based Mendelian Randomization and Path Analyses
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2025-04-22 |
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bioconductor-gofunction
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public |
GO-function: deriving biologcially relevant functions from statistically significant functions
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2025-04-22 |
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kfoots
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public |
The package provides methods for fitting multivariate count data with a mixture model or a hidden markov model. Each mixture component is a negative multivariate random variable and an EM algorithm is used to maximize the likelihood.
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2025-04-22 |
