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ucsc-pslscore
|
public |
calculate web blat score from psl files
|
2024-12-13 |
|
ncbi-ngs-sdk
|
public |
NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.
|
2024-12-13 |
|
abundancebin
|
public |
No Summary
|
2024-12-13 |
|
xtandem
|
public |
No Summary
|
2024-12-13 |
|
fasta3
|
public |
The FASTA package - protein and DNA sequence similarity searching and alignment programs
|
2024-12-13 |
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minimap
|
public |
Experimental tool to find approximate mapping positions between long sequences
|
2024-12-13 |
|
libdivsufsort
|
public |
No Summary
|
2024-12-13 |
|
2pg_cartesian
|
public |
2pg cartesian is a framework of optimization algorithms for protein structure prediction.
|
2024-12-13 |
|
ucsc-paranodestart
|
public |
version 12.18
|
2024-12-13 |
|
karect
|
public |
Read error correction tool based on multiple alignment.
|
2024-12-13 |
|
allegro
|
public |
A fast linkage and haplotype analysis utility making use of MTBDD to reduce complexity.
|
2024-12-13 |
|
fwdpy11
|
public |
Forward-time population genetic simulation in Python.
|
2024-12-13 |
|
digestiflow-cli
|
public |
Command line client for Digestiflow.
|
2024-12-13 |
|
pgma-simple
|
public |
No Summary
|
2024-12-13 |
|
ucsc-bedweedoverlapping
|
public |
Filter out beds that overlap a 'weed.bed' file.
|
2024-12-13 |
|
meryl
|
public |
No Summary
|
2024-12-13 |
|
ska
|
public |
SKA (Split Kmer Analysis)
|
2024-12-13 |
|
ucsc-dbsnoop
|
public |
Produce an overview of a database.
|
2024-12-13 |
|
fmlrc
|
public |
A long-read error correction tool using the multi-string Burrows Wheeler Transform
|
2024-12-13 |
|
estscan
|
public |
No Summary
|
2024-12-13 |
|
ucsc-linestora
|
public |
generate .ra format from lines with pipe-separated fields
|
2024-12-13 |
|
ucsc-stringify
|
public |
Convert file to C strings.
|
2024-12-13 |
|
vdjer
|
public |
B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data
|
2024-12-13 |
|
perl-socket6
|
public |
IPv6 related part of the C socket.h defines and structure manipulators
|
2024-12-13 |
|
ucsc-bigpsltopsl
|
public |
convert bigPsl file to psl
|
2024-12-13 |
|
w4mclassfilter
|
public |
Filter Workflow4Metabolomics feature list, optionally imputing NA values.
|
2024-12-13 |
|
ucsc-wigcorrelate
|
public |
Produce a table that correlates all pairs of wigs.
|
2024-12-13 |
|
perl-perl-unsafe-signals
|
public |
Allow unsafe handling of signals in selected blocks
|
2024-12-13 |
|
ucsc-hgfindspec
|
public |
Create hgFindSpec table from trackDb.ra files.
|
2024-12-13 |
|
fqtrim
|
public |
fqtrim is a versatile stand-alone utility that can be used to trim adapters, poly-A tails, terminal unknown bases (Ns) and low quality 3' regions in reads from high-throughput next-generation sequencing machines.
|
2024-12-13 |
|
ucsc-ratolines
|
public |
Output .ra file stanzas as single lines, with pipe-separated fields.
|
2024-12-13 |
|
fasta_ushuffle
|
public |
a wrapper for uShuffle
|
2024-12-13 |
|
art
|
public |
No Summary
|
2024-12-13 |
|
kalign2
|
public |
Kalign is a fast and accurate multiple sequence alignment algorithm designed to align large numbers of protein sequences.
|
2024-12-13 |
|
gvcfgenotyper
|
public |
A utility for merging and genotyping Illumina-style GVCFs.
|
2024-12-13 |
|
perl-acme-damn
|
public |
'Unbless' Perl objects.
|
2024-12-13 |
|
r-lme4qtl
|
public |
Linear mixed models (lme4) with flexible covariance structure for qtl and association analysis.
|
2024-12-13 |
|
pizzly
|
public |
Fast fusion detection using kallisto
|
2024-12-13 |
|
starcode
|
public |
Starcode: sequence clustering based on all-pairs search
|
2024-12-13 |
|
nanoblaster
|
public |
Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences
|
2024-12-13 |
|
genometester4
|
public |
A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
|
2024-12-13 |
|
ucsc-hgspeciesrna
|
public |
Create fasta file with RNA from one species
|
2024-12-13 |
|
dialign2
|
public |
DIALIGN multiple sequence alignment using various sources of external information
|
2024-12-13 |
|
ucsc-trfbig
|
public |
Mask tandem repeats on a big sequence file.
|
2024-12-13 |
|
ucsc-bedgraphtobigwig
|
public |
Convert a bedGraph file to bigWig format.
|
2024-12-13 |
|
fqzcomp
|
public |
Fqzcomp is a basic fastq compressor, designed primarily for high performance.
|
2024-12-13 |
|
ucsc-maffrag
|
public |
Extract maf sequences for a region from database
|
2024-12-13 |
|
epa-ng
|
public |
Massively parallel phylogenetic placement of genetic sequences
|
2024-12-13 |
|
btrim
|
public |
This tool is made to remove "tips" (short dead ends) from a compacted de Bruijn graph and more generally to remove sequencing errors. Used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)
|
2024-12-13 |
|
ucsc-genepredtomafframes
|
public |
create mafFrames tables from a genePreds
|
2024-12-13 |
