| Package Name | Access | Summary | Updated |
|---|---|---|---|
| perl-file-find-rule | public | Alternative interface to File::Find. | 2025-06-05 |
| pasta | public | An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm. | 2025-06-05 |
| bowtie2 | public | A fast and sensitive gapped read aligner. | 2025-06-03 |
| iced | public | The python module iced implements the ICE normalization of hic data. | 2025-06-03 |
| transit | public | TRANSIT | 2025-06-02 |
| freebayes | public | Bayesian haplotype-based polymorphism discovery and genotyping. | 2025-06-02 |
| bioconductor-dirichletmultinomial | public | Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data | 2025-06-02 |
| bioconductor-decipher | public | Tools for curating, analyzing, and manipulating biological sequences | 2025-05-29 |
| rsem | public | RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. | 2025-05-29 |
| evidencemodeler | public | Evidence Modeler combines ab intio gene predictions, protein alignments, and transcript alignments into weighted consensus gene structures | 2025-05-29 |
| beagle-lib | public | general purpose library for evaluating the likelihood of sequence evolution on trees | 2025-05-29 |
| rtg-tools | public | RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation. | 2025-05-29 |
| entrez-direct | public | Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process. | 2025-05-28 |
| mcl | public | MCL - a cluster algorithm for graphs | 2025-05-28 |
| r-sleuth | public | Tools for investigating RNA-Seq. | 2025-05-28 |
| metabat2 | public | Metagenome binning. | 2025-05-28 |
| arvados-python-client | public | Python API for Arvados | 2025-05-28 |
| cutadapt | public | Trim adapters from high-throughput sequencing reads | 2025-05-28 |
| salmon | public | Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment | 2025-05-28 |
| smallgenomeutilities | public | A collection of scripts that are useful for dealing with viral RNA NGS data. | 2025-05-28 |
| kat | public | KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts | 2025-05-27 |
| deepvariant | public | DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | 2025-05-24 |
| perl-devel-size | public | Perl extension for finding the memory usage of Perl variables | 2025-05-24 |
| shortstack | public | ShortStack: Comprehensive annotation and quantification of small RNA genes | 2025-05-24 |
| pyseer | public | Sequence Element Enrichment Analysis (SEER), python implementation. | 2025-05-22 |
