| Package Name | Access | Summary | Updated |
|---|---|---|---|
| r-stitch | public | STITCH - Sequencing To Imputation Through Constructing Haplotypes. | 2025-09-22 |
| fasta3 | public | The FASTA package - protein and DNA sequence similarity searching and alignment programs | 2025-09-22 |
| glimmerhmm | public | No Summary | 2025-09-22 |
| visceral-evaluatesegmentation | public | EvaluateSegmentation is a tool that compares two volumes (a test segmentation and a ground truth segmentation) using 22 different metrics that were selected as a result of a comprehensive research into the metrics used in the medical volume segmentations. | 2025-09-22 |
| survivor | public | Toolset for SV simulation, comparison and filtering | 2025-09-21 |
| expansionhunter | public | A tool for estimating repeat sizes | 2025-09-21 |
| vt | public | A tool set for short variant discovery in genetic sequence data | 2025-09-21 |
| concoct | public | Clustering cONtigs with COverage and ComposiTion | 2025-09-20 |
| samsift | public | Advanced filtering and tagging of SAM/BAM alignments using Python expressions. | 2025-09-19 |
| ngs-disambiguate | public | Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem | 2025-09-19 |
| snp-dists | public | Convert a FASTA alignment to SNP distance matrix | 2025-09-19 |
| smalt | public | SMALT aligns DNA sequencing reads with a reference genome. | 2025-09-18 |
| edena | public | No Summary | 2025-09-18 |
| rust-bio-tools | public | A growing collection of fast and secure command line utilities for dealing with NGS data implemented on top of Rust-Bio. | 2025-09-18 |
| abyss | public | Assembly By Short Sequences - a de novo, parallel, paired-end short read sequence assembler. | 2025-09-18 |
| pantools | public | PanTools is a pangenomic toolkit for comparative analysis of large numbers of genomes. | 2025-09-18 |
| beagle | public | Beagle is a software package for phasing genotypes and for imputing ungenotyped markers. | 2025-09-18 |
| filtlong | public | Filtlong is a tool for filtering long reads. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter. | 2025-09-18 |
| trinity | public | Trinity assembles transcript sequences from Illumina RNA-Seq data. | 2025-09-18 |
| snap-aligner | public | Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data | 2025-09-17 |
| dsrc | public | high-performance compression of sequencing reads stored in FASTQ format | 2025-09-16 |
| bamutil | public | Programs that perform operations on SAM/BAM files, all built into a single executable, bam. | 2025-09-16 |
| nonpareil | public | Estimate average coverage and create curves for metagenomic datasets | 2025-09-16 |
| idba | public | IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short Reads Sequencing data with Highly Uneven Sequencing Depth. | 2025-09-16 |
| advntr | public | A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data | 2025-09-16 |
