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bioconda / packages

Package Name Access Summary Updated
gseapy public Gene Set Enrichment Analysis in Python. 2025-03-01
bbmap public BBMap is a short read aligner, as well as various other bioinformatic tools. 2025-02-28
igv public Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations. 2025-02-28
colorbrewer public An easy way to get access to ColorBrewer schemes from within a Python program. 2025-02-27
vsearch public A versatile open source tool for metagenomics (USEARCH alternative) 2025-02-27
bracken public Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample. 2025-02-26
pbmm2 public A minimap2 frontend for PacBio native data formats 2025-02-26
sambamba public Tools for working with SAM/BAM data 2025-02-26
pbsv public pbsv - PacBio structural variant (SV) calling and analysis tools 2025-02-26
lima public lima - The PacBio Barcode Demultiplexer 2025-02-26
megan public A tool for studying the taxonomic content of a set of DNA reads 2025-02-26
oases public No Summary 2025-02-26
kma public KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. 2025-02-26
ivar public iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. 2025-02-26
bandage public Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily. 2025-02-26
salmon public Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment 2025-02-26
pairtools public CLI tools to process mapped Hi-C data. 2025-02-26
yara public Yara is an exact tool for aligning DNA sequencing reads to reference genomes. 2025-02-25
aragorn public ARAGORN, tRNA (and tmRNA) detection 2025-02-25
mob_suite public MOB-suite is a set of tools for finding, typing and reconstruction of plasmids from draft and complete genome assemblies. 2025-02-25
kneaddata public KneadData is a tool designed to perform quality control on metagenomic sequencing data. 2025-02-25
trinity public Trinity assembles transcript sequences from Illumina RNA-Seq data. 2025-02-24
freebayes public Bayesian haplotype-based polymorphism discovery and genotyping. 2025-02-24
lastz public LASTZ is a program for aligning DNA sequences, a pairwise aligner. 2025-02-24
star-fusion public STAR-Fusion fusion variant caller. All dependencies required to run FusionInspector and FusionAnnotator are included. 2025-02-24
gridss public GRIDSS: the Genomic Rearrangement IDentification Software Suite 2025-02-24
perl-sereal-encoder public Fast, compact, powerful binary serialization 2025-02-24
perl-sereal-decoder public Fast, compact, powerful binary deserialization 2025-02-24
perl-bio-db-hts public Read files using HTSlib including BAM/CRAM, Tabix and BCF database files 2025-02-24
pantools public PanTools is a pangenomic toolkit for comparative analysis of large numbers of genomes. 2025-02-24
spades public SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies. 2025-02-23
vcflib public Command-line tools for manipulating VCF files. 2025-02-19
perl-template-toolkit public Comprehensive template processing system. 2025-02-19
libssw public An SIMD Smith-Waterman C/C++/Python/Java Library for Use in Genomic Applications. 2025-02-19
quast public Quality Assessment Tool for Genome Assemblies 2025-02-19
perl-specio public Type constraints and coercions for Perl 2025-02-19
kraken2 public Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. 2025-02-18
gappa public Genesis Applications for Phylogenetic Placement Analysis 2025-02-18
r-stitch public STITCH - Sequencing To Imputation Through Constructing Haplotypes. 2025-02-18
perl-error public Error/exception handling in an OO-ish way 2025-02-18
hmftools-purple public PURPLE is a purity ploidy estimator for tumor samples. 2025-02-18
fastahack public No Summary 2025-02-17
hmftools-cobalt public Calculate read-depth counts and GC ratios to use in PURPLE. 2025-02-17
hmftools-amber public Generates a tumor BAF file for use in PURPLE. 2025-02-17
truvari public Structural variant comparison tool for VCFs 2025-02-16
sevenbridges-python public SBG API python client bindings 2025-02-16
pronto public Python frontend to ontologies. 2025-02-16
ucsc-cell-browser public A browser for single-cell data, main site at http://cells.ucsc.edu. UCSC Cellbrowser, an interactive browser for single cell data. Includes importers and basic pipelines for text files, Seurat, Scanpy and Cellranger. All Javascript - does not require a server backend. 2025-02-14
macs2 public Model Based Analysis for ChIP-Seq data 2025-02-14
t-coffee public A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence 2025-02-14

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