| Package Name | Access | Summary | Updated |
|---|---|---|---|
| macs2 | public | Model Based Analysis for ChIP-Seq data | 2025-10-05 |
| snakemake-minimal | public | A popular workflow management system aiming at full in-silico reproducibility. | 2025-10-04 |
| snakemake | public | A popular workflow management system aiming at full in-silico reproducibility. | 2025-10-04 |
| mikado | public | A Python3 annotation program to select the best gene model in each locus | 2025-10-03 |
| paladin | public | Protein Alignment and Detection Interface. | 2025-10-03 |
| parsnp | public | Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection. | 2025-10-03 |
| estmapper | public | No Summary | 2025-10-03 |
| phipack | public | Simple, rapid, and statistically efficient test for recombination. | 2025-10-03 |
| wtdbg | public | Wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly | 2025-10-03 |
| pkiss | public | RNA secondary structure prediction including K-type and kissing hairpin- pseudoknots. | 2025-10-02 |
| r-rubic | public | No Summary | 2025-10-02 |
| t-coffee | public | A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence. | 2025-10-02 |
| gimmemotifs | public | Motif prediction pipeline and various motif-related tools. | 2025-10-02 |
| shovill | public | Microbial assembly pipeline for Illumina paired-end reads | 2025-10-02 |
| mccortex | public | De novo genome assembly and multisample variant calling | 2025-10-01 |
| rnablueprint | public | The RNAblueprint library solves the problem of uniformly sampling RNA/DNA sequences compatible to multiple structural constraints and sequence constraints. | 2025-10-01 |
| rnaz | public | predicting structural noncoding RNAs | 2025-09-30 |
| segemehl | public | Short read mapping with gaps | 2025-09-30 |
| rainbow | public | Efficient tool for clustering and assembling short reads, especially for RAD | 2025-09-30 |
| stacks | public | Stacks is a software pipeline for building loci from short-read sequences. | 2025-09-30 |
| genomepy | public | Install and use genomes & gene annotations the easy way! | 2025-09-30 |
| kraken | public | Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. | 2025-09-30 |
| snpeff | public | Genetic variant annotation and effect prediction toolbox | 2025-09-30 |
| rnacode | public | RNAcode - Analyze the protein coding potential in multiple sequence alignments RNAcode relies on evolutionary signatures including synonymous/conservative mutations and conservation of the reading frame. It does not use any species specific sequence characteristics whatsoever and does not use any machine learning techniques. | 2025-09-30 |
| sweepfinder2 | public | The BWA read mapper. | 2025-09-29 |
