|
bioconductor-raggedexperiment
|
public |
Representation of Sparse Experiments and Assays Across Samples
|
2024-12-21 |
|
bioconductor-gsca
|
public |
GSCA: Gene Set Context Analysis
|
2024-12-21 |
|
bioconductor-annotationhub
|
public |
Client to access AnnotationHub resources
|
2024-12-21 |
|
bioconductor-uniprot.ws
|
public |
R Interface to UniProt Web Services
|
2024-12-21 |
|
bioconductor-multiassayexperiment
|
public |
Software for the integration of multi-omics experiments in Bioconductor
|
2024-12-21 |
|
bioconductor-biomart
|
public |
Interface to BioMart databases (i.e. Ensembl)
|
2024-12-21 |
|
r-pore
|
public |
An R package to enable organisation and visualisation of nanopore sequencing data
|
2024-12-21 |
|
genenotebook
|
public |
A colleborative notebook for comparative genomics
|
2024-12-20 |
|
bioconductor-methtargetedngs
|
public |
Perform Methylation Analysis on Next Generation Sequencing Data
|
2024-12-20 |
|
bioconductor-maskbad
|
public |
Masking probes with binding affinity differences
|
2024-12-20 |
|
bioconductor-beachmat
|
public |
Compiling Bioconductor to Handle Each Matrix Type
|
2024-12-20 |
|
bioconductor-summarizedexperiment
|
public |
A container (S4 class) for matrix-like assays
|
2024-12-20 |
|
bioconductor-sangerseqr
|
public |
Tools for Sanger Sequencing Data in R
|
2024-12-20 |
|
bioconductor-procoil
|
public |
Prediction of Oligomerization of Coiled Coil Proteins
|
2024-12-20 |
|
bioconductor-annotationdbi
|
public |
Manipulation of SQLite-based annotations in Bioconductor
|
2024-12-20 |
|
bioconductor-delayedmatrixstats
|
public |
Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects
|
2024-12-20 |
|
bioconductor-harshlight
|
public |
A "corrective make-up" program for microarray chips
|
2024-12-20 |
|
bioconductor-medme
|
public |
Modelling Experimental Data from MeDIP Enrichment
|
2024-12-20 |
|
blast
|
public |
BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit.
|
2024-12-20 |
|
bioconductor-drimseq
|
public |
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
|
2024-12-20 |
|
bioconductor-rnbeads.mm9
|
public |
RnBeads.mm9
|
2024-12-20 |
|
bioconductor-metcirc
|
public |
Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics data
|
2024-12-20 |
|
bioconductor-sigfuge
|
public |
SigFuge
|
2024-12-19 |
|
bioconductor-triplex
|
public |
Search and visualize intramolecular triplex-forming sequences in DNA
|
2024-12-19 |
|
bioconductor-rnbeads.mm10
|
public |
RnBeads.mm10
|
2024-12-19 |
|
bioconductor-kebabs
|
public |
Kernel-Based Analysis of Biological Sequences
|
2024-12-19 |
|
bioconductor-rrdp
|
public |
Interface to the RDP Classifier
|
2024-12-19 |
|
bioconductor-cnvgsa
|
public |
Gene Set Analysis of (Rare) Copy Number Variants
|
2024-12-19 |
|
bioconductor-pepstat
|
public |
Statistical analysis of peptide microarrays
|
2024-12-19 |
|
bioconductor-chromdraw
|
public |
chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.
|
2024-12-19 |
|
bioconductor-r4rna
|
public |
An R package for RNA visualization and analysis
|
2024-12-19 |
|
bioconductor-cleaver
|
public |
Cleavage of Polypeptide Sequences
|
2024-12-19 |
|
bioconductor-omiccircos
|
public |
High-quality circular visualization of omics data
|
2024-12-19 |
|
bioconductor-jaspar2014
|
public |
Data package for JASPAR
|
2024-12-19 |
|
bioconductor-delayedarray
|
public |
A unified framework for working transparently with on-disk and in-memory array-like datasets
|
2024-12-19 |
|
bioconductor-motifcounter
|
public |
R package for analysing TFBSs in DNA sequences
|
2024-12-19 |
|
r-mmgenome
|
public |
Tools for extracting individual genomes from metagenomes
|
2024-12-19 |
|
bioconductor-seqpattern
|
public |
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
|
2024-12-19 |
|
bioconductor-degraph
|
public |
Two-sample tests on a graph
|
2024-12-19 |
|
bioconductor-rnbeads.rn5
|
public |
RnBeads.rn5
|
2024-12-19 |
|
bioconductor-bayseq
|
public |
Empirical Bayesian analysis of patterns of differential expression in count data
|
2024-12-19 |
|
bioconductor-fastseg
|
public |
fastseg - a fast segmentation algorithm
|
2024-12-19 |
|
bioconductor-genomictuples
|
public |
Representation and Manipulation of Genomic Tuples
|
2024-12-19 |
|
bioconductor-generxcluster
|
public |
gRx Differential Clustering
|
2024-12-19 |
|
bioconductor-microrna
|
public |
Data and functions for dealing with microRNAs
|
2024-12-19 |
|
bioconductor-altcdfenvs
|
public |
alternative CDF environments (aka probeset mappings)
|
2024-12-19 |
|
ascat
|
public |
ASCAT is a method to derive copy number profiles of tumour cells,
accounting for normal cell admixture and tumour aneuploidy (Figure 1).
ASCAT infers tumour purity (the fraction of tumour cells) and ploidy (the
amount of DNA per tumour cell, expressed as multiples of haploid genomes)
from SNP array or massively parallel sequencing data, and calculates
whole-genome allele-specific copy number profiles (the number of copies of
both parental alleles for all SNP loci across the genome).
|
2024-12-19 |
|
bioconductor-cindex
|
public |
Chromosome Instability Index
|
2024-12-19 |
|
bioconductor-gmrp
|
public |
GWAS-based Mendelian Randomization and Path Analyses
|
2024-12-19 |
|
bioconductor-sscu
|
public |
Strength of Selected Codon Usage
|
2024-12-19 |
