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bioconductor-biocworkflowtools
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public |
Tools to aid the development of Bioconductor Workflow packages
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2025-04-22 |
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pycoqc
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public |
PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
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2025-04-22 |
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r-gpseq
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public |
Some functions for modeling sequence read counts as a generalized poisson model and to use this model for detecting differentially expressed genes in different conditions and differentially spliced exons.
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2025-04-22 |
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minvar
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public |
A tool to detect minority variants in HIV-1 and HCV populations
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2025-04-22 |
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apoc
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public |
Large-scale structural comparison of protein pockets
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2025-04-22 |
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perl-bio-eutilities
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public |
Webagent which interacts with and retrieves data from NCBI eUtils.
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2025-04-22 |
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perl-tie-log4perl
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public |
Tie a filehandle to log via Log4perl
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2025-04-22 |
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intervene
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public |
A tool for intersection of multiple gene or genomic region sets and visualization as venn diagrams, UpSet plots or pariwaise heatmaps
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2025-04-22 |
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hlaprofiler
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public |
HLAProfiler uses k-mer profiles to predict HLA types from paired-end RNA-seq data.
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2025-04-22 |
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xxhash
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public |
Python binding for xxHash
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2025-04-22 |
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xdg
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public |
Variables defined by the XDG Base Directory Specification
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2025-04-22 |
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netreg
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public |
netReg fits linear regression models using network-penalization.
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2025-04-22 |
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arb-bio
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public |
ARB 6 Sequence Analysis Suite
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2025-04-22 |
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phyml
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public |
Phylogenetic estimation using (Maximum) Likelihood
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2025-04-22 |
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indelfixer
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public |
A sensitive aligner for 454, Illumina and PacBio data, employing a full Smith-Waterman alignment against a reference.
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2025-04-22 |
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peakachu
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public |
Peak calling tool for CLIP-seq data.
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2025-04-22 |
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cmv
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public |
A collection of tools for the visualisation of Hidden Markov Models (HMMV) and RNA-family models (CMV).
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2025-04-22 |
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mrbayes
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public |
Bayesian Inference of Phylogeny
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2025-04-22 |
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r-rematch2
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public |
Wrappers on 'regexpr' and 'gregexpr' to return the match results in tidy data frames.
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2025-04-22 |
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json_collect_data_source
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public |
This tool is able to receive multiple datasets (optionally with their metadata) in a single query. As an extension of the galaxy-json-data-source tool (https://github.com/mdshw5/galaxy-json-data-source), it allows to handle archives (gz, bz2, tar, and zip) organizing their content in a collection.
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2025-04-22 |
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bioconductor-risa
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public |
Converting experimental metadata from ISA-tab into Bioconductor data structures
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2025-04-22 |
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bioconductor-biocviews
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public |
Categorized views of R package repositories
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2025-04-22 |
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w4mclstrpeakpics
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public |
Visualize W4M sample-cluster peaks - Produce a figure to assess the similarities and differences among peaks in a cluster of samples using XCMS-preprocessed data files as input. MIT Licence allows redistribution.
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2025-04-22 |
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fusepy
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public |
Simple ctypes bindings for FUSE
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2025-04-22 |
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r-microseq
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public |
Basic functions for microbial sequence data analysis.
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2025-04-22 |
