| Package Name | Access | Summary | Updated |
|---|---|---|---|
| reads2graph | public | reads2graph is an efficient tool for constructing edit-distance-based read graph from short-read sequencing data. | 2025-04-22 |
| pydna_repeatfinder | public | Search for direct and inverted repeats in DNA sequences. | 2025-04-22 |
| dice | public | Cell lineage reconstruction from single-cell CNA data | 2025-04-22 |
| fast-edit-distance | public | A implementation of edit distance with improved runtime. | 2025-04-22 |
| venndata | public | Package for plotting Venn diagrams with more than 3 sets | 2025-04-22 |
| difcover | public | Pipeline to identify genomic regions with read coverage differences between pairs of samples | 2025-04-22 |
| plinkio | public | A library for parsing plink genotype files | 2025-04-22 |
| strdust | public | Tandem repeat genotyper for long reads. | 2025-04-22 |
| rabbittclust | public | RabbitTClust enables fast clustering analysis of millions bacteria genomes with MinHash sketches | 2025-04-22 |
| pydbsnp | public | Interface with dbSNP VCF data | 2025-04-22 |
| cnasim | public | Improved simulation of single-cell copy number profiles and DNA-seq data from tumors | 2025-04-22 |
| classpro | public | A K-mer classifier for HiFi reads . | 2025-04-22 |
| rnavirhost | public | RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes | 2025-04-22 |
| sneakernet-qc | public | A QC pipeline for raw reads | 2025-04-22 |
| metav | public | Rapid detection and classification of viruses in metagenomics sequencing. | 2025-04-22 |
| colorid_bv | public | Experiments with using BIGSI data structure for metagenomic and QC applications | 2025-04-22 |
| get_orfs | public | Fast extraction of ORFs in all possible translation tables | 2025-04-22 |
| gapseq | public | Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks | 2025-04-22 |
| shigapass | public | ShigaPass: An in silico tool to predict Shigella serotypes | 2025-04-22 |
| cured | public | Classification Using Restriction Enzyme Diagnostics | 2025-04-22 |
| mmseqs2-server | public | Server for MMseqs2, Foldseek and ColabFold | 2025-04-22 |
| pstrain | public | An Iterative Microbial Strains Profiling Algorithm for Shotgun Metagenomic Sequencing Data | 2025-04-22 |
| dechat | public | Repeat and haplotype aware error correction in nanopore sequencing reads with Dechat | 2025-04-22 |
| liqa | public | A statistical tool to quantify isoform-specific expression using long-read RNA-seq. | 2025-04-22 |
| vclean | public | vClean: Assessing the contamination of viral genomes | 2025-04-22 |
