| Package Name | Access | Summary | Updated |
|---|---|---|---|
| primers | public | This is a small, straightforward tool for creating PCR primers. Its target use-case is DNA assembly. | 2025-04-22 |
| igfinder | public | A tool to extract Igh and Igl/Igk gene sequences from assembled transcripts | 2025-04-22 |
| localhgt | public | Tools for dealing with SAM, BAM and CRAM files | 2025-04-22 |
| kpop | public | An assembly-free and scalable method for the comparative analysis of microbial genomes, based on full k-mer spectra and dataset-specific transformations. | 2025-04-22 |
| ms2rescore-rs | public | Rust functionality for the MS²Rescore package | 2025-04-22 |
| mofapy2 | public | Multi-Omics Factor Analysis | 2025-04-22 |
| galitime | public | benchmarking of scientific computaional experiments | 2025-04-22 |
| pycomo | public | PyCoMo is a software package for generating and analysing compartmentalized community metabolic models. | 2025-04-22 |
| isonform | public | De novo construction of isoforms from long-read data | 2025-04-22 |
| jaeger-bio | public | A quick and precise pipeline for detecting phages in sequence assemblies. | 2025-04-22 |
| microview | public | Generate reports from taxonomic classification data | 2025-04-22 |
| gmsc-mapper | public | GMSC-mapper is a command line tool to query the Global Microbial smORFs Catalog (GMSC). | 2025-04-22 |
| mtgrasp | public | reference-grade de novo animal mitochondrial genome assembly and standardization | 2025-04-22 |
| test | public | Test recipe, copied from the seqtk recipe | 2025-04-22 |
| phava | public | Detection of invertons from long-read sequencing datasets | 2025-04-22 |
| rabbitqcplus | public | RabbitQCPlus is an efficient quality control tool for sequencing data | 2025-04-22 |
| bioconductor-cellhashr | public | An R package designed to demultiplex cell hashing data. More information in https://bimberlab.github.io/cellhashR/Lab B (2024). cellhashR: A Package for Demultiplexing Cell Hashing Data. | 2025-04-22 |
| gmm-demux | public | GMM-Demux is a Gaussian-Mixture-Model-based software for processing sample barcoding data (cell hashing and MULTI-seq). | 2025-04-22 |
| ntroot | public | Ancestry inference from genomic data | 2025-04-22 |
| primerforge | public | primerForge: software to identify primers that can be used to distinguish genomes. | 2025-04-22 |
| treeqmc | public | TREE-QMC is a quartet-based method for estimating species trees from gene trees. | 2025-04-22 |
| lemur | public | Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets | 2025-04-22 |
| handyreadgenotyper | public | Tool for training model and classifying reads from environmental ONT amplicon sequencing. | 2025-04-22 |
| reviewer | public | A tool for visualizing alignments of reads in regions containing tandem repeats | 2025-04-22 |
| tree-qmc | public | TREE-QMC is a quartet-based method for estimating species trees from gene trees. | 2025-04-22 |
