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sparc
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public |
No Summary
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2025-08-21 |
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perl-findbin
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public |
Locate directory of original perl script.
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2025-08-20 |
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augustus
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public |
AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. It can be used as an ab initio program, which means it bases its prediction purely on the sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources such as EST, MS/MS, protein alignments and synthenic genomic alignments.
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2025-08-20 |
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perl-module-corelist
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public |
What modules shipped with versions of perl.
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2025-08-20 |
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perl-bio-phylo
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public |
An object-oriented Perl toolkit for analyzing and manipulating phyloinformatic data.
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2025-08-20 |
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paraphase
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public |
HiFi-based caller for highly homologous genes
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2025-08-20 |
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perl-bio-bigfile
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public |
Low-level interface to BigWig & BigBed files
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2025-08-20 |
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perl-bio-db-hts
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public |
Read files using HTSlib including BAM/CRAM, Tabix and BCF database files
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2025-08-20 |
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bioconductor-singlecelltk
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public |
Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
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2025-08-20 |
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hmnfusion
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public |
Fusion analysis from DNA genomics.
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2025-08-20 |
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paml
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public |
A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood.
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2025-08-20 |
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sepp
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public |
SATe-enabled phylogenetic placement.
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2025-08-20 |
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bioconductor-dupradar
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public |
Assessment of duplication rates in RNA-Seq datasets
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2025-08-20 |
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predictosaurus
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public |
Predictosaurus is a command-line tool designed for uncertainty-aware haplotype-based genomic variant effect prediction.
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2025-08-20 |
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remag
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public |
Recovery of high-quality eukaryotic genomes from complex metagenomes
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2025-08-20 |
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hail
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public |
Hail is Python-based data analysis tool for working with genomic data.
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2025-08-20 |
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jvarkit-bamstats04
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public |
Coverage statistics for a BED file.
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2025-08-20 |
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macsylib
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public |
MacSyLib: Python library that help to detect of macromolecular, systems genetic pathways… in prokaryotes protein datasets using systems modelling and similarity search.
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2025-08-20 |
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hi-corrector
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public |
Remove biases from chromatin contact matrices generated by genome-wide proximity ligation assays, e.g. Hi-C and its variant TCC
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2025-08-20 |
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ushuffle
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public |
uShuffle---a useful tool for shuffling biological sequences while preserving the k-let counts
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2025-08-20 |
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perl-bio-procedural
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public |
Simple low-dependency procedural interfaces to BioPerl
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2025-08-20 |
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gargammel
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public |
Tool for simulating ancient DNA datasets.
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2025-08-19 |
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samblaster
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public |
Mark duplicates in and extract discordant and split reads from SAM files.
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2025-08-19 |
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perl-inline-c
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public |
C Language Support for Inline.
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2025-08-19 |
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lumpy-sv-minimal
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public |
A general probabilistic framework for structural variant discovery. This package contains only the lumpy executable
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2025-08-19 |
