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bioconductor-singlecelltk
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public |
Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
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2025-08-20 |
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hmnfusion
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public |
Fusion analysis from DNA genomics.
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2025-08-20 |
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paml
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public |
A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood.
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2025-08-20 |
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sepp
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public |
SATe-enabled phylogenetic placement.
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2025-08-20 |
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bioconductor-dupradar
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public |
Assessment of duplication rates in RNA-Seq datasets
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2025-08-20 |
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predictosaurus
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public |
Predictosaurus is a command-line tool designed for uncertainty-aware haplotype-based genomic variant effect prediction.
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2025-08-20 |
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remag
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public |
Recovery of high-quality eukaryotic genomes from complex metagenomes
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2025-08-20 |
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hail
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public |
Hail is Python-based data analysis tool for working with genomic data.
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2025-08-20 |
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jvarkit-bamstats04
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public |
Coverage statistics for a BED file.
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2025-08-20 |
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macsylib
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public |
MacSyLib: Python library that help to detect of macromolecular, systems genetic pathways… in prokaryotes protein datasets using systems modelling and similarity search.
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2025-08-20 |
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hi-corrector
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public |
Remove biases from chromatin contact matrices generated by genome-wide proximity ligation assays, e.g. Hi-C and its variant TCC
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2025-08-20 |
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ushuffle
|
public |
uShuffle---a useful tool for shuffling biological sequences while preserving the k-let counts
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2025-08-20 |
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perl-bio-procedural
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public |
Simple low-dependency procedural interfaces to BioPerl
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2025-08-20 |
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gargammel
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public |
Tool for simulating ancient DNA datasets.
|
2025-08-19 |
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samblaster
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public |
Mark duplicates in and extract discordant and split reads from SAM files.
|
2025-08-19 |
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perl-inline-c
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public |
C Language Support for Inline.
|
2025-08-19 |
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lumpy-sv-minimal
|
public |
A general probabilistic framework for structural variant discovery. This package contains only the lumpy executable
|
2025-08-19 |
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dxpy
|
public |
DNAnexus Platform API bindings for Python
|
2025-08-19 |
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nanoplot
|
public |
Plotting suite for long read sequencing data and alignments.
|
2025-08-19 |
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medaka
|
public |
A tool to create consensus sequences and variant calls from nanopore sequencing data using neural networks.
|
2025-08-19 |
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fastq-tools
|
public |
A collection of fastq manipulation scripts written in C for speed.
|
2025-08-19 |
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reditools3
|
public |
REDItools3 is an RNA editing detection tool implemented in Python3 for analyzing RNA-seq data.
|
2025-08-19 |
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haplotaglr
|
public |
Haplotagging individual long reads using known haplotype information.
|
2025-08-19 |
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hisat2-pipeline
|
public |
A pipeline to automatically run an RNA-seq analysis using HISAT2/Stringtie using default settings.
|
2025-08-19 |
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ms2deepscore
|
public |
Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
|
2025-08-19 |
