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hmftools-chord
|
public |
Predict HRD using somatic mutations contexts
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2025-07-23 |
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pcdl
|
public |
physicell data loader (pcdl) provides a platform independent, python3 based, pip installable interface to transform output, generated with the PhysiCell agent based modeling framework, into standard formats.
|
2025-07-23 |
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ndex2
|
public |
Nice CX Python includes a client and a data model.
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2025-07-23 |
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pegas
|
public |
PeGAS is a Snakemake pipeline for genome analysis
|
2025-07-23 |
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snakemake-executor-plugin-kubernetes
|
public |
A snakemake executor plugin for submission of jobs to Kubernetes.
|
2025-07-23 |
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kma
|
public |
KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend.
|
2025-07-23 |
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cleanifier
|
public |
A fast lightweight tool to remove contamination using k-mers.
|
2025-07-23 |
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craq
|
public |
Pinpoint assembly errors for genomic assessing and correcting.
|
2025-07-23 |
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orthanq
|
public |
Uncertainty aware HLA typing and general haplotype quantification.
|
2025-07-23 |
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ervmancer
|
public |
Quantifies HERV short read RNA sequencing expression data
|
2025-07-23 |
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sylph-tax
|
public |
Integrating taxonomic information into the sylph metagenome profiler.
|
2025-07-23 |
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biocode
|
public |
Bioinformatics code libraries and scripts.
|
2025-07-22 |
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rsidx
|
public |
Library for indexing VCF files for random access searches by rsID.
|
2025-07-22 |
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alen
|
public |
Simple terminal sequence alignment viewer
|
2025-07-22 |
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crocodeel
|
public |
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
|
2025-07-22 |
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agat
|
public |
Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format.
|
2025-07-22 |
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svision-pro
|
public |
Neural-network-based long-read SV caller.
|
2025-07-22 |
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gpsw
|
public |
GPSW is a tool for analysing Global Protein Stability Profiling data.
|
2025-07-22 |
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bigwig-nim
|
public |
Command-line querying+conversion of bigwigs
|
2025-07-22 |
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goalign
|
public |
goalign is a set of command line tools to manipulate multiple alignments
|
2025-07-22 |
|
r-tidyheatmap
|
public |
This is a tidy implementation for heatmap. At the moment it is based on the (great) package 'ComplexHeatmap'. The goal of this package is to interface a tidy data frame with this powerful tool. Some of the advantages are: Row and/or columns colour annotations are easy to integrate just specifying one parameter (column names). Custom grouping of rows is easy to specify providing a grouped tbl. For example: df %>% group_by(...). Labels size adjusted by row and column total number. Default use of Brewer and Viridis palettes.
|
2025-07-22 |
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vcfbub
|
public |
Popping bubbles in vg deconstruct VCFs
|
2025-07-22 |
|
parasail-python
|
public |
Python bindings for the parasail C library containing implementations of pairwise sequence alignment algorithms.
|
2025-07-22 |
|
hmftools-lilac
|
public |
LILAC is a WGS tool to determine HLA Class I types.
|
2025-07-22 |
|
pantax
|
public |
Strain-level metagenomic profiling using pangenome graphs with PanTax
|
2025-07-22 |
