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ontime
|
public |
Extract subsets of ONT (Nanopore) reads based on time
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2025-08-01 |
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impg
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public |
impg: implicit pangenome graphs.
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2025-08-01 |
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emblmygff3
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public |
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
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2025-08-01 |
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ngs-bits
|
public |
Short-read sequencing tools
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2025-08-01 |
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clair3-illumina
|
public |
Clair3 with libraries to support variant calling using Illumina short-reads. Version in sync with Clair3.
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2025-08-01 |
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octopusv
|
public |
OctopusV: Advanced Structural Variant Analysis Toolkit.
|
2025-08-01 |
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relecov-tools
|
public |
Tools for managing and processing of relecov data.
|
2025-08-01 |
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clair3
|
public |
Clair3 is a small variant caller for long-reads. Compare to PEPPER (r0.4), Clair3 (v0.1) shows a better SNP F1-score with ≤30-fold of ONT data (precisionFDA Truth Challenge V2), and a better Indel F1-score, while runs generally four times faster. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.
|
2025-08-01 |
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seqfu
|
public |
DNA sequence utilities
|
2025-08-01 |
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oligomap
|
public |
Oligomap is a program for fast identification of nearly-perfect matches of small RNAs in sequence databases.
|
2025-08-01 |
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stereogene
|
public |
StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data
|
2025-08-01 |
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sorted_nearest
|
public |
Find nearest interval.
|
2025-08-01 |
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metabolishmm
|
public |
Constructing phylogenies and performing functional annotations with HMM markers.
|
2025-08-01 |
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seqsizzle
|
public |
A pager for viewing FASTQ files with fuzzy adaptor matching and coloring.
|
2025-08-01 |
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ngseqbasic
|
public |
Basic ChIP/DNaseI/ATAC analysis - from FASTQ to visualisation of tracks, in one command.
|
2025-08-01 |
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geno2phenotb
|
public |
Prediction of Mycobacterium tuberculosis drug resistance from WGS data
|
2025-08-01 |
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tortoize
|
public |
Application to calculate ramachandran z-scores
|
2025-08-01 |
|
tgv
|
public |
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
|
2025-08-01 |
|
bioemu
|
public |
Biomolecular emulator for scalable emulation of protein equilibrium ensembles with generative deep learning
|
2025-08-01 |
|
hapcut2
|
public |
Tools for haplotype assembly from sequence data
|
2025-08-01 |
|
spacerextractor
|
public |
Extract CRISPR spacers from metagenome short reads.
|
2025-08-01 |
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ensembl-vep
|
public |
Ensembl Variant Effect Predictor
|
2025-08-01 |
|
libsequence
|
public |
A C++ class library for evolutionary genetics.
|
2025-08-01 |
|
genometools-genometools
|
public |
GenomeTools genome analysis system.
|
2025-07-31 |
|
bcbio-gff
|
public |
A Python library to read and write Generic Feature Format (GFF).
|
2025-07-31 |
