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bioconda-repodata-patches
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public |
generate tweaks to index metadata, hosted separately from anaconda.org index
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2025-03-31 |
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soi
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public |
Orthology Index (OrthoIndex or OI) determines the orthology of a syntenic block.
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2025-03-30 |
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ngsfetch
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public |
Fast retrieval of metadata and fastq files with ffq and aria2c
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2025-03-30 |
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blast
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public |
BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit.
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2025-03-30 |
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gempipe
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public |
gempipe is a tool for the reconstruction of strain-specific genome-scale metabolic models.
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2025-03-30 |
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gnparser
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public |
GNparser normalises scientific names and extracts their semantic elements
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2025-03-30 |
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r-corncob
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public |
Statistical modeling for correlated count data using the beta-binomial distribution, described in Martin et al. (2020) <doi:10.1214/19-AOAS1283>. It allows for both mean and overdispersion covariates.
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2025-03-30 |
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pybiolib
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public |
BioLib Python Client
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2025-03-30 |
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gsearch
|
public |
gsearch is an ultra-fast and scalable microbial genome search program based on MinHash-like metrics and graph-based approximate nearest neighbor search
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2025-03-29 |
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dbcan
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public |
Standalone version of dbCAN annotation tool for automated CAZyme annotation.
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2025-03-29 |
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quantms-rescoring
|
public |
PSM rescoring python package with scripts and helpers for the quantms workflow
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2025-03-29 |
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aliceasm
|
public |
Efficient HiFi genome assembler producing haplotype-separated assemblies
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2025-03-28 |
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atlas
|
public |
ATLAS: Analysis Tools for Ancient and Low-depth Samples
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2025-03-28 |
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vambcore
|
public |
Performant backend functions for the Vamb binning tool
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2025-03-28 |
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nextclade
|
public |
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
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2025-03-28 |
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civicpy
|
public |
CIViC variant knowledgebase analysis toolkit.
|
2025-03-28 |
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td2
|
public |
TD2: a tool to find protein coding regions in transcripts
|
2025-03-28 |
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ncbi-datasets-pyclient
|
public |
NCBI Datasets API
|
2025-03-28 |
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pytximport
|
public |
pytximport - gene count estimation from transcript-level quantification
|
2025-03-28 |
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vvv2_display
|
public |
Creates png image file with all [vardict] variants proportions alongside genome/assembly with annotations from [vadr].
|
2025-03-28 |
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obonet
|
public |
Parse OBO formatted ontologies into networkx
|
2025-03-28 |
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perl-namespace-autoclean
|
public |
Keep imports out of your namespace
|
2025-03-28 |
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svtopovz
|
public |
Complex structural variant visualization for HiFi sequencing data: plotting tool.
|
2025-03-28 |
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hmftools-linx
|
public |
LINX is an annotation, interpretation and visualisation tool for structural variants.
|
2025-03-28 |
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polap
|
public |
POLAP: plant organelle long-read assembly pipeline
|
2025-03-28 |
|
taxmyphage
|
public |
Script to assign taxonomy to a bacteriophage at the genus and species level
|
2025-03-28 |
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magneto
|
public |
MAGNETO is an automated snakemake workflow dedicated to MAG reconstruction from metagenomic data.
|
2025-03-28 |
|
genotypy
|
public |
Automatically detect genomic barcodes integrated into loci of interest from sequencing data
|
2025-03-28 |
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seismic-rna
|
public |
SEISMIC-RNA software by the Rouskin Lab.
|
2025-03-28 |
|
nextstrain-cli
|
public |
The Nextstrain command-line interface (CLI)
|
2025-03-28 |
|
sequenoscope
|
public |
sequenoscope is a versatile bioinformatic pipeline for the analysis of sequencing data.
|
2025-03-28 |
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psauron
|
public |
PSAURON: a machine learning model for rapid assessment of protein coding gene annotation
|
2025-03-28 |
|
scanpy-cli
|
public |
CLI for Scanpy
|
2025-03-28 |
|
perl-math-bigint
|
public |
Arbitrary size floating point math package
|
2025-03-28 |
|
genmod
|
public |
Annotate genetic inheritance models in variant files
|
2025-03-28 |
|
nextflow
|
public |
A DSL for data-driven computational pipelines http://nextflow.io
|
2025-03-28 |
|
snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-03-28 |
|
snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-03-28 |
|
yleaf
|
public |
Yleaf - A tool for Y-chromosome haplogroup prediction
|
2025-03-28 |
|
vcflib
|
public |
Command-line tools for manipulating VCF files.
|
2025-03-28 |
|
r-signac
|
public |
A framework for the analysis and exploration of single-cell chromatin data. The 'Signac' package contains functions for quantifying single-cell chromatin data, computing per-cell quality control metrics, dimension reduction and normalization, visualization, and DNA sequence motif analysis. Reference: Stuart and Butler et al. (2019) <doi:10.1016/j.cell.2019.05.031>.
|
2025-03-28 |
|
slivar
|
public |
filter/annotate variants in VCF/BCF format with simple expressions
|
2025-03-28 |
|
commec
|
public |
commec: a free, open-source, globally available tool for DNA sequence screening
|
2025-03-28 |
|
pisad
|
public |
pisad - Phsaed Intraspecies Sample Anomalies Detection tool
|
2025-03-28 |
|
planemo
|
public |
Command-line utilities to assist in building tools for the Galaxy project (http://galaxyproject.org/).
|
2025-03-28 |
|
vsnp3
|
public |
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
|
2025-03-28 |
|
ena-webin-cli
|
public |
Data submissions to ENA can be made using the Webin command line submission interface (Webin-CLI).
|
2025-03-28 |
|
rpsbproc
|
public |
RpsbProc, the post-RPSBLAST Processing Utility.
|
2025-03-28 |
|
pegasuspy
|
public |
An efficient Python analysis tool which scales to transcriptomes of millions of single cells.
|
2025-03-28 |
|
amiga
|
public |
Analysis of Microbial Growth Assays
|
2025-03-28 |
