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ntsm
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public |
ntsm - Nucleotide Sequence/Sample Matcher
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2024-11-25 |
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voyager
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public |
Rapid and efficient mapping algorithm for long sequencing reads with insertion- and deletion errors.
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2024-11-25 |
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star
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public |
An RNA-seq read aligner.
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2024-11-25 |
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damidseq_pipeline
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public |
An automated pipeline for processing DamID sequencing datasets.
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2024-11-25 |
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vgorient
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public |
Scripts for processing mitochondrial graphs.
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2024-11-25 |
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hmftools-sage
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public |
SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage.
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2024-11-25 |
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hmftools-sigs
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public |
Fits sample SNV counts to trinucleotide signature definitions.
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2024-11-25 |
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hmftools-virus-interpreter
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public |
Post-process VIRUSBreakend summary results.
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2024-11-25 |
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hmftools-purple
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public |
PURPLE is a purity ploidy estimator for tumor samples.
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2024-11-25 |
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stranger
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public |
Annotate VCF files with STR variants with pathogenicity implications.
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2024-11-25 |
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straglr
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public |
Short-tandem repeat genotyping using long reads
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2024-11-25 |
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gmap
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public |
Genomic mapping and alignment program for mRNA and EST sequences.
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2024-11-25 |
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phyclone
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public |
Accurate Bayesian reconstruction of cancer phylogenies from bulk sequencing.
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2024-11-25 |
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absense
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public |
abSENSE: a method to interpret undetected homologs
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2024-11-25 |
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clinker-py
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public |
Gene cluster comparison figure generator
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2024-11-25 |
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ashlar
|
public |
Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
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2024-11-25 |
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wipertools
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public |
A suite of programs that drop or fix pesky lines in FASTQ files and that split FASTQ files into chunks or merge them.
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2024-11-25 |
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hifiadapterfilt
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public |
Convert .bam to .fastq and remove reads with remnant PacBio HiFi adapter sequences
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2024-11-25 |
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cobs
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public |
Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
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2024-11-25 |
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bioconda-repodata-patches
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public |
generate tweaks to index metadata, hosted separately from anaconda.org index
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2024-11-25 |
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dysgu
|
public |
A collection of tools for calling structural variants using short or long reads
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2024-11-24 |
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samshee
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public |
A schema-agnostic parser and writer for illumina sample sheets v2.
|
2024-11-24 |
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halfdeep
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public |
Automated detection of intervals covered at half depth by sequenced reads.
|
2024-11-23 |
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quantms-utils
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public |
Python package with scripts and helpers for the quantms workflow.
|
2024-11-23 |
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genodsp
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public |
General workbench for processing signals along genomic (chromosomal) intervals
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2024-11-23 |
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bbmap
|
public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
|
2024-11-23 |
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chromap
|
public |
Fast alignment and preprocessing of chromatin profiles
|
2024-11-22 |
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fwdpy11
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public |
Forward-time population genetic simulation in Python.
|
2024-11-22 |
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teloscope
|
public |
A telomere annotation tools for genome assemblies
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2024-11-22 |
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scspectra
|
public |
Supervised discovery of interpretable gene programs from single-cell data.
|
2024-11-22 |
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meteor
|
public |
Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems.
|
2024-11-22 |
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influx_si
|
public |
Metabolic flux and concentration estimation based on stable isotope labeling
|
2024-11-22 |
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pharokka
|
public |
Fast Phage Annotation Program
|
2024-11-22 |
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gafpack
|
public |
Convert alignments to pangenome variation graphs to coverage maps
|
2024-11-22 |
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parsnp
|
public |
Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection.
|
2024-11-22 |
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resistify
|
public |
A resistance gene annotation tool
|
2024-11-22 |
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biobb_mem
|
public |
Biobb_mem is the Biobb module for membrane structure analysis.
|
2024-11-22 |
|
polap
|
public |
POLAP: plant organelle long-read assembly pipeline
|
2024-11-22 |
|
deeplc
|
public |
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
|
2024-11-22 |
|
panta
|
public |
PanTA - pan-genome pipeline
|
2024-11-22 |
|
htsinfer
|
public |
HTSinfer infers metadata from Illumina high throughput sequencing (HTS) data
|
2024-11-22 |
|
dnaapler
|
public |
Reorients assembled microbial sequences
|
2024-11-22 |
|
deeplcretrainer
|
public |
Evaluating DeepLC performance and retraining prediction models.
|
2024-11-22 |
|
simug
|
public |
A simple, flexible, and powerful tool to simulate genome sequences with pre-defined or random genomic variants.
|
2024-11-22 |
|
saccharis
|
public |
A CAZyme discovery tool. Easily create phylogenetic trees from FASTA files and CAZyme families.
|
2024-11-22 |
|
pangolin-data
|
public |
Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
|
2024-11-22 |
|
metabolights-utils
|
public |
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
|
2024-11-22 |
|
ega-cryptor
|
public |
EGA Cryptor v2.0.0 is a tool designed to encrypt files compliant with the European Genome-phenome Archive (EGA)
|
2024-11-22 |
|
savana
|
public |
SAVANA: a somatic structural variant caller for long-read data
|
2024-11-21 |
|
r-stitch
|
public |
STITCH - Sequencing To Imputation Through Constructing Haplotypes.
|
2024-11-21 |
