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pantools
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public |
PanTools is a pangenomic toolkit for comparative analysis of large numbers of genomes.
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2025-09-18 |
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aminoextract
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public |
Extract amino acid sequences from a fasta file based on a GFF
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2025-09-18 |
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beagle
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public |
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.
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2025-09-18 |
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expam
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public |
Metagenomic profiling using a reference phylogeny
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2025-09-18 |
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biobb_haddock
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public |
biobb_haddock is the Biobb module collection to compute information-driven flexible protein-protein docking.
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2025-09-18 |
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haddock_biobb
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public |
HADDOCK3 is the next generation integrative modelling software in the long-lasting HADDOCK project.
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2025-09-18 |
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filtlong
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public |
Filtlong is a tool for filtering long reads. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter.
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2025-09-18 |
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augur
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public |
Process pathogen genome data for the Nextstrain platform.
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2025-09-18 |
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biobb_adapters
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public |
Biobb_adapters is the Biobb module collection to use the building blocks with several workflow managers.
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2025-09-18 |
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biobb_flexserv
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public |
Biobb_flexserv is the Biobb module collection for biomolecular flexibility studies on protein 3D structures.
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2025-09-18 |
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trinity
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public |
Trinity assembles transcript sequences from Illumina RNA-Seq data.
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2025-09-18 |
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pcasuite
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public |
PCAzip compresses a trajectory, recentering the snapshots using a standard RMS or a gaussian version.
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2025-09-18 |
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stripepy-hic
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public |
StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning
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2025-09-18 |
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influx_si
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public |
Metabolic flux and concentration estimation based on stable isotope labeling
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2025-09-18 |
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magneto
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public |
MAGNETO is an automated snakemake workflow dedicated to MAG reconstruction from metagenomic data.
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2025-09-18 |
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crispritz
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public |
CRISPRitz, tool package for CRISPR experiments assessment and analysis.
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2025-09-17 |
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strvctvre
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public |
StrVCTVRE, a structural variant classifier for exonic deletions and duplications
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2025-09-17 |
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vcfdist
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public |
vcfdist: benchmarking phased germline variant calls in VCF format.
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2025-09-17 |
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snap-aligner
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public |
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
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2025-09-17 |
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camlhmp
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public |
Classification through yAML Heuristic Mapping Protocol.
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2025-09-17 |
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usher
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public |
Ultrafast Sample Placement on Existing Trees (UShER).
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2025-09-17 |
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dsrc
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public |
high-performance compression of sequencing reads stored in FASTQ format
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2025-09-16 |
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bamutil
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public |
Programs that perform operations on SAM/BAM files, all built into a single executable, bam.
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2025-09-16 |
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tpmcalculator
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public |
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files.
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2025-09-16 |
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ont-modkit
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public |
A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.
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2025-09-16 |
