| Package Name | Access | Summary | Updated |
|---|---|---|---|
| snakemake-executor-plugin-slurm | public | A Snakemake executor plugin for submitting jobs to a SLURM cluster. | 2025-09-20 |
| cawlign | public | A tool for aligning consensus sequences to reference genomes. | 2025-09-20 |
| clumppling | public | Cluster matching and permutation program with integer linear programming. | 2025-09-20 |
| art_modern | public | Modernized ART simulator of diverse Next-Generation Sequencing reads | 2025-09-20 |
| censtats | public | Centromere statistics toolkit. | 2025-09-20 |
| ibridges | public | Package for accessing data and metadata on iRods servers. | 2025-09-20 |
| seqchromloader | public | Sequence and chromatin dataloader for deep learning | 2025-09-19 |
| vembrane | public | Filter VCF/BCF files with Python expressions. | 2025-09-19 |
| genbank | public | Code to work with Genbank files | 2025-09-19 |
| chopper | public | A rust command line for filtering and trimming long reads. | 2025-09-19 |
| samsift | public | Advanced filtering and tagging of SAM/BAM alignments using Python expressions. | 2025-09-19 |
| phynder | public | Efficient likelihood calculations to place samples into a phylogenetic tree. | 2025-09-19 |
| ngs-disambiguate | public | Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem | 2025-09-19 |
| snp-dists | public | Convert a FASTA alignment to SNP distance matrix | 2025-09-19 |
| smalt | public | SMALT aligns DNA sequencing reads with a reference genome. | 2025-09-18 |
| edena | public | No Summary | 2025-09-18 |
| rust-bio-tools | public | A growing collection of fast and secure command line utilities for dealing with NGS data implemented on top of Rust-Bio. | 2025-09-18 |
| codoff | public | codoff: program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome. | 2025-09-18 |
| aardvark | public | A tool for sniffing out the differences in vari-Ants | 2025-09-18 |
| abyss | public | Assembly By Short Sequences - a de novo, parallel, paired-end short read sequence assembler. | 2025-09-18 |
| plasmar | public | Plasmid Like Assembly Sequence Matching Algorithm for Resistance (PLASMAR) | 2025-09-18 |
| gamma | public | Tool for Gene Allele Mutation Microbial Assessment | 2025-09-18 |
| mtsv | public | MTSv is a suite of metagenomic binning and analysis tools. | 2025-09-18 |
| comebin | public | COMEBin allows effective binning of metagenomic contigs using COntrastive Multi-viEw representation learning | 2025-09-18 |
| hecatomb | public | Hecatomb: and end-to-end platform for viral metagenomics | 2025-09-18 |
