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egap
|
public |
EGAP pipeline for genome assembly and QC analysis
|
2025-04-22 |
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pb-cpg-tools
|
public |
Collection of tools for the analysis of CpG data
|
2025-04-22 |
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get_pangenes
|
public |
A versatile software package for calling pangenes from whole genome alignments
|
2025-04-22 |
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haplogrep3
|
public |
A tool for mtDNA haplogroup classification.
|
2025-04-22 |
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frag_gene_scan_rs
|
public |
Rust implementation of the gene prediction model for short and error-prone reads
|
2025-04-22 |
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autobigs-cli
|
public |
A CLI tool to rapidly fetch fetch MLST profiles given sequences for various diseases.
|
2025-04-22 |
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autobigs-engine
|
public |
A library to rapidly fetch fetch MLST profiles given sequences for various diseases.
|
2025-04-22 |
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nafcodec
|
public |
PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files.
|
2025-04-22 |
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pybwa
|
public |
Pybwa is a python module that makes it easy to align sequence data. It is a lightweight wrapper of bwa.
|
2025-04-22 |
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kbo-cli
|
public |
Command-line interface for the kbo local aligner
|
2025-04-22 |
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grepq
|
public |
Quickly filter FASTQ files.
|
2025-04-22 |
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eastr
|
public |
Tool for emending alignments of spuriously spliced transcript reads.
|
2025-04-22 |
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linkedsv
|
public |
A novel structural variant caller for 10X Genomics (linked-read) sequencing data
|
2025-04-22 |
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ourotools
|
public |
A comprehensive toolkit for quality control and analysis of single-cell long-read RNA-seq data
|
2025-04-22 |
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biobb_morph
|
public |
biobb_morph is the Biobb module collection to perform molecular dynamics simulations using the morph MD suite.
|
2025-04-22 |
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qimba
|
public |
Toolkit for metabarcoding analyses
|
2025-04-22 |
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octopusv
|
public |
OctopusV: Advanced Structural Variant Analysis Toolkit
|
2025-04-22 |
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r-ukbrapr
|
public |
R functions to use in the UK Biobank Research Analysis Platform (RAP)
|
2025-04-22 |
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geomloss
|
public |
Geometric loss functions between point clouds, images and volumes.
|
2025-04-22 |
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memopair
|
public |
A package for identifying methylated motif pairs
|
2025-04-22 |
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mrtrix3
|
public |
A set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
|
2025-04-22 |
|
lovis4u
|
public |
Loci Visualisation Tool.
|
2025-04-22 |
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snakebids
|
public |
BIDS integration into snakemake workflows
|
2025-04-22 |
|
seg-suite
|
public |
The seg suite provides tools for manipulating segments, alignments, and annotations of sequences.
|
2025-04-22 |
|
rust-gtars
|
public |
Performance-critical tools to manipulate, analyze, and process genomic interval data.
|
2025-04-22 |
