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jvarkit-bam2svg
|
public |
BAM to Scalar Vector Graphics (SVG)
|
2023-06-16 |
|
magpurify
|
public |
Identify and remove incorrectly binned contigs from metagenome-assembled genomes.
|
2023-06-16 |
|
scaden
|
public |
Cell type deconvolution using single cell data
|
2023-06-16 |
|
deeplift
|
public |
DeepLIFT (Deep Learning Important FeaTures)
|
2023-06-16 |
|
cesm
|
public |
The Community Earth System Model (CESM) is a coupled climate model for simulating Earth’s climate system
|
2023-06-16 |
|
pbgcpp
|
public |
pbgcpp - GenomicConsensus in C++
|
2023-06-16 |
|
pipelign
|
public |
A pipeline for automated multiple sequence alignment, particularly of viral sequences.
|
2023-06-16 |
|
kronos
|
public |
Kronos is a highly flexible Python-based software tool that mainly enables bioinformatics developers, i.e. bioinformaticians who develop workflows for analyzing genomic data, to quickly make a workflow.
|
2023-06-16 |
|
perl-dumbbench
|
public |
More reliable benchmarking with the least amount of thinking
|
2023-06-16 |
|
perl-archive-tar-wrapper
|
public |
API wrapper around the 'tar' utility
|
2023-06-16 |
|
perl-test-lectrotest
|
public |
Easy, automatic, specification-based tests
|
2023-06-16 |
|
amas
|
public |
Calculate various summary statistics on a multiple sequence alignment
|
2023-06-16 |
|
bioconductor-mapkl
|
public |
A Hybrid Feature Selection method for gene expression data
|
2023-06-16 |
|
collect-columns
|
public |
Retrieve a column for each in a set of tables, placing them in a single output table.
|
2023-06-16 |
|
perl-devel-checkos
|
public |
check what OS we're running on
|
2023-06-16 |
|
perl-moosex-object-pluggable
|
public |
Make your classes pluggable
|
2023-06-16 |
|
wgs2ncbi
|
public |
Toolkit for preparing genomes for submission to NCBI
|
2023-06-16 |
|
perl-prefork
|
public |
Optimized module loading for forking or non-forking processes
|
2023-06-16 |
|
deepac
|
public |
Predicting pathogenic potentials of novel DNA with reverse-complement neural networks.
|
2023-06-16 |
|
perl-biosails
|
public |
Standard(ized) Analysis Information Layers
|
2023-06-16 |
|
perl-number-witherror
|
public |
Numbers with error propagation and scientific rounding
|
2023-06-16 |
|
snp-mutator
|
public |
Generate mutated sequence files from a reference genome.
|
2023-06-16 |
|
circos-tools
|
public |
circos-tools provides several utility add-on scripts, such as for bundling links
|
2023-06-16 |
|
braker2
|
public |
BRAKER2 is an extension of BRAKER1
|
2023-06-16 |
|
mtsv
|
public |
MTSv is a suite of metagenomic binning and analysis tools.
|
2023-06-16 |
|
r-genemodel
|
public |
Using simple input, this package creates plots of gene models. Users can create plots of alternatively spliced gene variants and the positions of mutations and other gene features.
|
2023-06-16 |
|
ismapper
|
public |
A mapping-based tool for identification of the site and orientation of IS insertions in bacterial genomes.
|
2023-06-16 |
|
eval
|
public |
Eval is a flexible tool for analyzing the performance of gene-structure prediction programs.
|
2023-06-16 |
|
pybda
|
public |
Big biological data analytics powered by Apache Spark
|
2023-06-16 |
|
perl-logger-simple
|
public |
Implementation of the Simran-Log-Log and Simran-Error-Error modules
|
2023-06-16 |
|
irida-uploader
|
public |
Upload NGS data to IRIDA system
|
2023-06-16 |
|
pepgenome
|
public |
A java tool to map peptide and peptidoform evideces to ENSEMBL Genome Coordinates
|
2023-06-16 |
|
gapfiller
|
public |
GapFiller is a seed-and-extend local assembler to fill the gap within paired reads.
|
2023-06-16 |
|
taxsbp
|
public |
TaxSBP: taxonomic structured bin packing
|
2023-06-16 |
|
gmcloser
|
public |
GMcloser fills and closes the gaps present in scaffold assemblies, especially those generated by the de novo assembly of whole genomes with next-generation sequencing (NGS) reads.
|
2023-06-16 |
|
phylovega
|
public |
Interactive Phylogenetic trees in Vega.
|
2023-06-16 |
|
recalladapters
|
public |
recalladapters - A tool to recall adapters for PacBio data
|
2023-06-16 |
|
phylogenetics
|
public |
Python API for managing a phylogenetics projects.
|
2023-06-16 |
|
pyasr
|
public |
Ancestral sequence reconstruction using Python.
|
2023-06-16 |
|
unitig-counter
|
public |
Uses a compressed de Bruijn graph (implemented in GATB) to count unitigs in bacterial populations.
|
2023-06-16 |
|
crispr_studio
|
public |
CRISPRStudio is a program developed to facilitate and accelerate CRISPR array visualization
|
2023-06-16 |
|
micropita
|
public |
microPITA is a computational tool enabling sample selection in two-stage (tiered) studies.
|
2023-06-16 |
|
transposcope
|
public |
A package for visualizing read coverage in areas flanking mobile element insertions.
|
2023-06-16 |
|
athena_meta
|
public |
Athena read cloud assembler for metagenomes
|
2023-06-16 |
|
biobb_structure_manager
|
public |
BioBB_structure_manager is a library to efficiently load and process biomolecular 3D structures.
|
2023-06-16 |
|
groopm
|
public |
Metagenomic binning suite
|
2023-06-16 |
|
maskrc-svg
|
public |
Masks recombinant regions in an alignment based on ClonalFrameML or Gubbins output Option to draw SVG of recombinant regions.
|
2023-06-16 |
|
gvcf2bed
|
public |
Convert gVCF into BED
|
2023-06-16 |
|
cactus
|
public |
Cactus is a reference-free whole-genome multiple alignment program based upon notion of Cactus graphs
|
2023-06-16 |
|
bioconductor-rchyoptimyx
|
public |
Optimyzed Cellular Hierarchies for Flow Cytometry
|
2023-06-16 |
