| Package Name | Access | Summary | Updated |
|---|---|---|---|
| pyhmmsearch | public | Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer. | 2025-09-07 |
| pmidcite | public | Download "Cited by" data from the NIH for any paper with a PubMed ID | 2025-09-07 |
| fastplong | public | Ultra-fast preprocessing and quality control for long-read sequencing data. | 2025-09-07 |
| unetcoreograph | public | UNetCoreograph - Automated segmentation of nuclei in 3D imaging data. | 2025-09-07 |
| pear | public | paired-end read merger | 2025-09-07 |
| mgikit | public | mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports. | 2025-09-07 |
| sawfish | public | Joint structural variant and copy number variant caller for HiFi sequencing data | 2025-09-07 |
| igv | public | Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations. | 2025-09-07 |
| multiqc | public | Create aggregate bioinformatics analysis reports across many samples and tools. | 2025-09-06 |
| auspice | public | Auspice is an open-source interactive tool for visualising phylogenomic data | 2025-09-06 |
| methbat | public | A battery of methylation tools for PacBio HiFi reads | 2025-09-05 |
| mageck | public | MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout), an algorithm to process, QC, analyze and visualize CRISPR screening data. | 2025-09-05 |
| pqlseqpy | public | Fast PQLseq in Python | 2025-09-05 |
| bird_tool_utils_python | public | Python utilities used as part of the bird suite of bioinformatic tools. | 2025-09-05 |
| cascade-reg | public | Causal discovery of gene regulatory programs from single-cell genomics | 2025-09-05 |
| afpdb | public | A Numpy-based PDB structure manipulation package | 2025-09-05 |
| gsalign | public | GSAlign: an ultra-fast sequence alignment tool | 2025-09-05 |
| scalpel | public | Sensitive detection of INDELs (INsertions and DELetions) | 2025-09-04 |
| galah | public | Galah aims to be a more scalable metagenome assembled genome (MAG) dereplication method. | 2025-09-04 |
| variant_tools | public | Integrated annotation and analysis of next gen sequencing data | 2025-09-04 |
| hgvs | public | HGVS Parser, Formatter, Mapper, and Validator. | 2025-09-04 |
| peregrine-2021 | public | A genome assembler designed for long-reads that have good enough accuracy | 2025-09-04 |
| primalbedtools | public | A collection of tools for working with primer.bed files. | 2025-09-04 |
| iseq | public | iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases. | 2025-09-04 |
| mess | public | Snakemake pipeline for simulating shotgun metagenomic samples | 2025-09-04 |
