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bioconductor-redseq
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public |
Analysis of high-throughput sequencing data processed by restriction enzyme digestion
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2024-12-30 |
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bioconductor-bsgenome.scerevisiae.ucsc.saccer1
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public |
Saccharomyces cerevisiae (Yeast) full genome as provided by UCSC (sacCer1, Oct. 2003) and stored in Biostrings objects.
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2024-12-30 |
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bioconductor-bsgenome.btaurus.ucsc.bostau9
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public |
Full genome sequences for Bos taurus (UCSC version bosTau9)
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2024-12-30 |
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bioconductor-guideseq
|
public |
GUIDE-seq and PEtag-seq analysis pipeline
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2024-12-30 |
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bioconductor-annotatr
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public |
Annotation of Genomic Regions to Genomic Annotations
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2024-12-30 |
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bioconductor-chippeakanno
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public |
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data
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2024-12-30 |
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bioconductor-methylpipe
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public |
Base resolution DNA methylation data analysis
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2024-12-30 |
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bioconductor-gothic
|
public |
Binomial test for Hi-C data analysis
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2024-12-30 |
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bioconductor-tapseq
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public |
Targeted scRNA-seq primer design for TAP-seq
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2024-12-30 |
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bioconductor-bsgenome.vvinifera.urgi.iggp8x
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public |
Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 8X) and available at the URGI (INRA). More details in Jaillon et al (Nature, 2007).
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2024-12-30 |
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bioconductor-bsgenome.rnorvegicus.ucsc.rn7
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public |
Full genome sequences for Rattus norvegicus (UCSC genome rn7)
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2024-12-30 |
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bioconductor-bsgenome.rnorvegicus.ucsc.rn5
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public |
Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn5, Mar. 2012) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-genomation
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public |
Summary, annotation and visualization of genomic data
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2024-12-30 |
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bioconductor-bsgenome.btaurus.ucsc.bostau3
|
public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-spiky
|
public |
Spike-in calibration for cell-free MeDIP
|
2024-12-30 |
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bioconductor-regioner
|
public |
Association analysis of genomic regions based on permutation tests
|
2024-12-30 |
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bioconductor-bsgenomeforge
|
public |
Forge your own BSgenome data package
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2024-12-30 |
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bioconductor-bsgenome.celegans.ucsc.ce11
|
public |
Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce11, Feb. 2013) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-gcapc
|
public |
GC Aware Peak Caller
|
2024-12-30 |
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bioconductor-bsgenome.ptroglodytes.ucsc.pantro3
|
public |
Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro3, Oct. 2010) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.mfascicularis.ncbi.6.0
|
public |
Full genome sequences for Macaca fascicularis (Macaca_fascicularis_6.0)
|
2024-12-30 |
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bioconductor-bsgenome.ppaniscus.ucsc.panpan2
|
public |
Full genome sequences for Pan paniscus (UCSC version panPan2)
|
2024-12-30 |
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bioconductor-bsgenome.dvirilis.ensembl.dvircaf1
|
public |
Full genome sequences for Drosophila virilis (assembly dvir_caf1)
|
2024-12-30 |
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bioconductor-varcon
|
public |
VarCon: an R package for retrieving neighboring nucleotides of an SNV
|
2024-12-30 |
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bioconductor-bsgenome.ppaniscus.ucsc.panpan1
|
public |
Full genome sequences for Pan paniscus (UCSC version panPan1)
|
2024-12-30 |
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bioconductor-bsgenome.celegans.ucsc.ce6
|
public |
Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.amellifera.beebase.assembly4
|
public |
iFull genome sequences for Apis mellifera (Honey Bee) as provided by BeeBase (assembly4, Feb. 2008) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.ptroglodytes.ucsc.pantro5
|
public |
Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro5, May 2016) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.hsapiens.1000genomes.hs37d5
|
public |
1000genomes Phase2 Reference Genome Sequence (hs37d5), based on NCBI GRCh37.
|
2024-12-30 |
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bioconductor-bsgenome.btaurus.ucsc.bostau8
|
public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau8, Jun. 2014) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.hsapiens.ucsc.hg38
|
public |
Full genomic sequences for Homo sapiens (UCSC genome hg38)
|
2024-12-30 |
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bioconductor-bsgenome.drerio.ucsc.danrer10
|
public |
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer10, Sep. 2014) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.drerio.ucsc.danrer5
|
public |
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.dmelanogaster.ucsc.dm3
|
public |
Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, Apr. 2006) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.mmusculus.ucsc.mm10
|
public |
Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)
|
2024-12-30 |
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bioconductor-bsgenome.mmulatta.ucsc.rhemac10
|
public |
Full genome sequences for Macaca mulatta (UCSC version rheMac10)
|
2024-12-29 |
|
bioconductor-bsgenome.mmulatta.ucsc.rhemac8
|
public |
Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac8, Nov. 2015) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-bsgenome.vvinifera.urgi.iggp12xv2
|
public |
Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 12Xv2) and available at the URGI (INRA)
|
2024-12-29 |
|
bioconductor-bsgenome.scerevisiae.ucsc.saccer3
|
public |
Saccharomyces cerevisiae (Yeast) full genome as provided by UCSC (sacCer3, April 2011) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-bsgenome.btaurus.ucsc.bostau6
|
public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau6, Nov. 2009) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-bsgenome.tguttata.ucsc.taegut1
|
public |
Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut1, Jul. 2008) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-bsgenome.mmusculus.ucsc.mm39
|
public |
Full genome sequences for Mus musculus (UCSC genome mm39, based on GRCm39)
|
2024-12-29 |
|
bioconductor-crisprshiny
|
public |
Exploring curated CRISPR gRNAs via Shiny
|
2024-12-29 |
|
bioconductor-bsgenome.sscrofa.ucsc.susscr11
|
public |
Full genome sequences for Sus scrofa (Pig) as provided by UCSC (susScr11, Feb. 2017) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-crisprverse
|
public |
Easily install and load the crisprVerse ecosystem for CRISPR gRNA design
|
2024-12-29 |
|
bioconductor-bsgenome.tguttata.ucsc.taegut2
|
public |
Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut2, Feb. 2013) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-crisprviz
|
public |
Visualization Functions for CRISPR gRNAs
|
2024-12-29 |
|
bioconductor-bsgenome.gaculeatus.ucsc.gasacu1
|
public |
Full genome sequences for Gasterosteus aculeatus (Stickleback) as provided by UCSC (gasAcu1, Feb. 2006) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-crisprdesign
|
public |
Comprehensive design of CRISPR gRNAs for nucleases and base editors
|
2024-12-29 |
|
bioconductor-bsgenome.cjacchus.ucsc.caljac4
|
public |
Full genome sequences for Callithrix jacchus (UCSC version calJac4)
|
2024-12-29 |
