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miga
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public |
Python package to optimize mutual information between two multiple sequence alignment.
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2023-06-18 |
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markermag
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public |
linking MAGs with 16S rRNA marker genes
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2023-06-18 |
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resmico
|
public |
Increasing the quality of metagenome-assembled genomes with deep learning
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2023-06-18 |
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fastkit
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public |
Routine pre-processing of biological data e.g. FASTA/FASTQ files
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2023-06-18 |
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ccne
|
public |
Carbapenemase-encoding gene copy number estimator
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2023-06-18 |
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mantis-msi
|
public |
MANTIS is a program developed for detecting microsatellite instability from paired-end BAM files
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2023-06-18 |
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quickdeconvolution
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public |
Deconvolves linked-reads sequencing data
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2023-06-18 |
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mdmcleaner
|
public |
A pipeline for the assessment, classification and refinement of microbial dark matter SAGs and MAGs
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2023-06-18 |
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microbeannotator
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public |
A user friendly microbe genome annotation tool
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2023-06-18 |
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dastk
|
public |
Differential ATAC-seq toolkit
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2023-06-18 |
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feems
|
public |
Fast Estimation of Effective Migration Surfaces
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2023-06-18 |
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extract_vcf
|
public |
Tool to extract information from vcf file.
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2023-06-18 |
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tyto
|
public |
Tyto (Take Your Terms from Ontologies) provides a handy interface for ontologies for use in your Python application.
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2023-06-18 |
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magphi
|
public |
A bioinformatics tool allowing for examnination and extraction of genomic features using seed sequences.
|
2023-06-18 |
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phertilizer
|
public |
Phertilizer is a method to grow a clonal tree from ultra-low coverage single-cell DNA sequenced data
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2023-06-18 |
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vcferr
|
public |
Probabilistic VCF genotype error simulation
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2023-06-18 |
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mitoz
|
public |
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
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2023-06-18 |
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scglue
|
public |
Graph-linked unified embedding for unpaired single-cell multi-omics data integration
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2023-06-18 |
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bte
|
public |
Cython wrapper enabling use of the MAT library in Python.
|
2023-06-18 |
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haplogrep
|
public |
A tool for mtDNA haplogroup classification.
|
2023-06-18 |
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hat-phasing
|
public |
HAT: Haplotype assembly tool that use both long and short reads to reconstruct haplotypes
|
2023-06-18 |
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mgca
|
public |
Microbial genome component and annotation pipeline
|
2023-06-18 |
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boquila
|
public |
NGS read simulator to eliminate read nucleotide bias in sequence analysis.
|
2023-06-18 |
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pyvcf3
|
public |
A Variant Call Format reader for Python
|
2023-06-18 |
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cladebreaker
|
public |
Nextflow pipeline for phylogenetic analysis.
|
2023-06-18 |
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parse_mito_blast
|
public |
Filtering blast out from querying assembly against mitochondrial database.
|
2023-06-18 |
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perl-devel-checklib
|
public |
check that a library is available
|
2023-06-18 |
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mgcplotter
|
public |
Microbial Genome Circular plotting tool using Circos
|
2023-06-18 |
|
genbank_to
|
public |
genbank_to: convert genbank files to a swath of other formats
|
2023-06-18 |
|
biosniff
|
public |
A Sniffer for Biological formats
|
2023-06-18 |
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aeon
|
public |
Python/Rust library for symbolic manipulation of Boolean networks.
|
2023-06-18 |
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metaplex
|
public |
Read Processing and Quality Control Toolkit for Dual-Indexed Metabarcoding
|
2023-06-18 |
|
hmtnote
|
public |
Human mitochondrial variants annotation using HmtVar.
|
2023-06-18 |
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vcfpy2
|
public |
Python 3 VCF library, based on vcfpy.
|
2023-06-18 |
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naltorfs
|
public |
Nested Alternate Open Reading Frames (nAlt-ORFs)
|
2023-06-18 |
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bwa-meme
|
public |
Faster BWA-MEM2 using learned-index
|
2023-06-18 |
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automappa
|
public |
Automappa: An interactive interface for exploration of metagenomes
|
2023-06-18 |
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propy3
|
public |
Python library for calculating various protein descriptors from protein sequences
|
2023-06-18 |
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cogclassifier
|
public |
Classify prokaryote protein sequences into COG functional category
|
2023-06-18 |
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gbkviz
|
public |
Simple web application to visualize and compare genomes in Genbank files
|
2023-06-18 |
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ampliconclassifier
|
public |
AmpliconClassifier classifies the output of AmpliconArchitect to detect different types of focal amplifications.
|
2023-06-18 |
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perl-ffi-checklib
|
public |
Check that a library is available for FFI
|
2023-06-18 |
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perl-class-trigger
|
public |
Mixin to add / call inheritable triggers
|
2023-06-18 |
|
lmas
|
public |
LMAS - Last (Meta)Genomic Assembler Standing
|
2023-06-18 |
|
pmlst
|
public |
Plasmid Multi-Locus Sequence Typing
|
2023-06-18 |
|
pprodigal
|
public |
PProdigal - Parallelized gene prediction based on Prodigal.
|
2023-06-18 |
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perl-bio-searchio-hmmer
|
public |
A parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)
|
2023-06-18 |
|
hocort
|
public |
HoCoRT - Host Contamination Removal Tool
|
2023-06-18 |
|
multisub
|
public |
multiSub is a command-line tool to prepare and/or submit a SARS-CoV-2 genome sequence to the NCBI Genbank, EBI ENA and GISAID sequence repositories.
|
2023-06-18 |
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haplocheck
|
public |
Detects in-sample contamination in mtDNA or WGS sequencing studies by analyzing the mitchondrial content.
|
2023-06-18 |
