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tecount
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public |
A package to count read alignments on transposable elements subfamilies, families and classes.
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2023-06-18 |
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transcriptm
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public |
Metagenomics analyses.
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2023-06-18 |
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physiofit4galaxy
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public |
Calculate extracellular fluxes from metabolite concentrations and biomass data
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2023-06-18 |
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dirseq
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public |
Work out whether RNAseq reads in general agree with the direction of the gene predicted.
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2023-06-18 |
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rpfbagr
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public |
Cli interface to predict gene knockout targets with an heterologous pathway
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2023-06-18 |
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taxadb
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public |
locally query the ncbi taxonomy
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2023-06-18 |
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saintbioutils
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public |
A package of utility and miscellaneous functions for using in bioinformaticspipelines, primarily in Python.
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2023-06-18 |
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vapor
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public |
VAPOR is a tool for classification of Influenza samples from raw short read sequence data for downstream bioinformatics analysis.
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2023-06-18 |
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plastedma
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public |
Plastic Enzymes Degrading in Metagenomic databases Analysis
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2023-06-18 |
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r-netcomi
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public |
Network Construction and Comparison for Microbiome Data
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2023-06-18 |
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r-mixedcca
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public |
Semi-parametric approach for sparse canonical correlation analysis
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2023-06-18 |
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liftofftools
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public |
A tool for comparing annotations across genome assemblies
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2023-06-18 |
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mcross
|
public |
The script to detect RNA-protein cross linking sites
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2023-06-18 |
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svsolver
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public |
The svSolver includes three executable programs: Presolver(svpre), Flowsolver(svsolver), Postsolver(svpost).
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2023-06-18 |
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braid-mrf
|
public |
Predicting protein complexes
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2023-06-18 |
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parallel-virfinder
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public |
parallel-virfinder, split virfinder execution in chuncks
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2023-06-18 |
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czlab_perl_lib
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public |
mCross Perl script
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2023-06-18 |
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nedrex
|
public |
A Python library for interfacing with the NeDRex API
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2023-06-18 |
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mydbfinder
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public |
MyDbFinder identifies genes from your own database in total or partial sequenced isolates of bacteria.
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2023-06-18 |
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c4counter
|
public |
returns the number and types of human C4 regions in a fasta file
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2023-06-18 |
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hla-asm
|
public |
find HLA gene exon coordinates in long read-based assemblies and carry out HLA typing at G group resolution
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2023-06-18 |
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kmerfinder
|
public |
Prediction of bacterial species using a fast K-mer algorithm.
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2023-06-18 |
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mhc-annotation
|
public |
Tools to annotate haplotypes of MHC with gene and transcript information
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2023-06-18 |
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grimer
|
public |
GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard
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2023-06-18 |
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interval-binning
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public |
A Python implementation of the interval binning scheme
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2023-06-18 |
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jvarkit-bamstats04
|
public |
Coverage statistics for a BED file.
|
2023-06-18 |
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ashleys-qc
|
public |
Automated Selection of High quality Libraries for the Extensive analYsis of Strandseq data (ASHLEYS).
|
2023-06-18 |
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paplot
|
public |
Automatic generation of cancer genome interactive report.
|
2023-06-18 |
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dinf
|
public |
discriminator-based inference for population genetics
|
2023-06-18 |
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vcf2tsvpy
|
public |
Genomic VCF to tab-separated values (TSV)
|
2023-06-18 |
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mantis-msi2
|
public |
MANTIS2 is a program developed for detecting microsatellite instability from paired-end BAM files
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2023-06-18 |
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blastmining
|
public |
blastMining: Mining NCBI BLAST outputs
|
2023-06-18 |
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vrhyme
|
public |
vRhyme functions by utilizing coverage variance comparisons and supervised machine learning classification of sequence features to construct viral metagenome-assembled genomes (vMAGs).
|
2023-06-18 |
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mosaic
|
public |
mosaic: counts Strand-seq reads and classifies strand states of each chromosome in each cell using a Hidden Markov Model.
|
2023-06-18 |
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mosaicatcher
|
public |
mosaicatcher: counts Strand-seq reads and classifies strand states of each chromosome in each cell using a Hidden Markov Model.
|
2023-06-18 |
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mvirs
|
public |
mVIRs: Localisation of inducible prophages using NGS data
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2023-06-18 |
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covsonar
|
public |
A database-driven system for handling genomic sequences and screening genomic profiles.
|
2023-06-18 |
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scte
|
public |
scTE builds genome indices for the fast alignment of reads to genes and TEs.
|
2023-06-18 |
|
hmntrimmer
|
public |
A trimmer for NGS reads
|
2023-06-18 |
|
agouti
|
public |
Annotation of Genomic and Transcriptomic Intervals
|
2023-06-18 |
|
cctk
|
public |
Tools to identify and compare CRISPR arrays.
|
2023-06-18 |
|
sbol-utilities
|
public |
Collection of scripts and functions for manipulating SBOL 3 data that can be run from the command line or as functions in Python.
|
2023-06-18 |
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gtftools
|
public |
gtftools provides a set of functions to compute or extract various features of gene models.
|
2023-06-18 |
|
corekaburra
|
public |
A commandline bioinformatics tool made to utilize syntenic information from genomes in the context of pan-genomes
|
2023-06-18 |
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pyfastg
|
public |
Minimal Python library for parsing SPAdes FASTG files
|
2023-06-18 |
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scexecute
|
public |
SCExecute generates cell-barcode specific BAM files from aligned, aggregate single-cell sequencing data, executing a user-provided command on each barcode-stratified BAM file.
|
2023-06-18 |
|
gothresher
|
public |
GOThresher: a program to remove annotation biases from protein function annotation datasets
|
2023-06-18 |
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mlst-cge
|
public |
Multi Locus Sequence Typing (MLST) determine the ST from an assembled genome or from a set of reads.
|
2023-06-18 |
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tmb
|
public |
This tool was designed to calculate a Tumor Mutational Burden (TMB) score from a VCF file.
|
2023-06-18 |
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hmnfusion
|
public |
Analysis fusion from DNA genomics
|
2023-06-18 |
