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multisub
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public |
multiSub is a command-line tool to prepare and/or submit a SARS-CoV-2 genome sequence to the NCBI Genbank, EBI ENA and GISAID sequence repositories.
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2023-06-18 |
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haplocheck
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public |
Detects in-sample contamination in mtDNA or WGS sequencing studies by analyzing the mitchondrial content.
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2023-06-18 |
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bg
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public |
Implementation of Breakpoint Graph data structure
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2023-06-18 |
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ifcnv
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public |
ifCNV: a novel isolation-forest-based package to detect copy number variations from various NGS datasets.
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2023-06-18 |
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titanomics
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public |
A comprehensive multi-omics data analysis pipeline.
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2023-06-18 |
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bialign
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public |
Bialignment of RNAs and proteins
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2023-06-18 |
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chiton
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public |
Chiton provides a Python wrapper to commonly used bioinformatics programs.
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2023-06-18 |
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pyfish
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public |
Plotting tool for evolutionary population dynamics. Creates a Fish (Muller) plot.
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2023-06-18 |
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macs
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public |
Model Based Analysis for ChIP-Seq data
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2023-06-18 |
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squire
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public |
Quantitative, locus-specific view of transposable element expression.
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2023-06-18 |
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lepwrap
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public |
The Snakemake pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring+orienting genome assemblies.
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2023-06-18 |
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epytope
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public |
A Framework for Epitope Detection and Vaccine Design
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2023-06-18 |
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metamlst
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public |
A computational pipeline for MLST typing from metagenomic data
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2023-06-18 |
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theiacov-gc
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public |
Command-line version of the TheiaCov genomic characterization workflow for SARS-CoV-2.
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2023-06-18 |
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secedo
|
public |
SNV-based clustering for single-cell sequencing data
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2023-06-18 |
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metaomestats
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public |
Scripts for calculating statistics from FASTA sequences
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2023-06-18 |
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simscsntree
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public |
Simulating single cell sequencing data
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2023-06-18 |
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perl-pod-eventual
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public |
read a POD document as a series of trivial events
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2023-06-18 |
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perl-test2-plugin-nowarnings
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public |
Fail if tests warn
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2023-06-18 |
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mudskipper
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public |
mudskipper is a tool for converting genomic BAM/SAM files to transcriptomic BAM/RAD files.
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2023-06-18 |
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trimap
|
public |
TriMap: Large-scale Dimensionality Reduction Using Triplets
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2023-06-18 |
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pmga
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public |
Command-line version of PMGA (PubMLST Genome Annotator) for all Neisseria species and Haemophilus influenzae
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2023-06-18 |
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perl-bio-procedural
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public |
Simple low-dependency procedural interfaces to BioPerl
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2023-06-18 |
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perl-bio-db-swissprot
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public |
Database object interface to SwissProt retrieval
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2023-06-18 |
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perl-bio-db-embl
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public |
Database object interface for EMBL entry retrieval
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2023-06-18 |
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perl-bio-db-refseq
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public |
Database object interface for RefSeq retrieval
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2023-06-18 |
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perl-bio-tools-run-remoteblast
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public |
Object for remote execution of the NCBI Blast via HTTP
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2023-06-18 |
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binning_refiner
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public |
Improving genome bins through the combination of different binning programs
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2023-06-18 |
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gloome
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public |
GLOOME is a program that analyzes the evolution of phyletic patterns within the likelihood framework.
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2023-06-18 |
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rpfa
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public |
Cli interface to run OptGene/OptKnock with an heterologous pathway
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2023-06-18 |
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perl-crypt-openssl-guess
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public |
Guess OpenSSL include path
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2023-06-18 |
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python_circos
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public |
Circos plots for python
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2023-06-18 |
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debreak
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public |
DeBreak, Deciphering the exact breakpoints of structural variations using long sequencing reads
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2023-06-18 |
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r-beyondcell
|
public |
Tool for the Analysis of tumour therapeutic heterogeneity in single-cell RNA-seq
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2023-06-18 |
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3d-dna
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public |
3D de novo assembly (3D-DNA) pipeline.
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2023-06-18 |
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hilinetojuicer
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public |
Convert HiLine SAM alignments to Juicer format
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2023-06-18 |
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consplice
|
public |
The Constrained Splicing (ConSplice) python module
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2023-06-18 |
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linkstats
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public |
Collect and process statistics from aligned linked-reads.
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2023-06-18 |
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plotsr
|
public |
Visualiser for structural annotations between multiple genomes
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2023-06-18 |
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coidb
|
public |
A tool to obtain and maintain a database of COI metabarcode references
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2023-06-16 |
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nwalign3
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public |
Updated version of nwalign with Python 3.x compatibility.
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2023-06-16 |
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seqlike
|
public |
Flexible biological sequence objects in Python
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2023-06-16 |
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sgcocaller
|
public |
Personalized haplotype construction and crossover calling in single-cell DNA sequenced gamete cells.
|
2023-06-16 |
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rcsbsearch
|
public |
Access the RCSB Search API
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2023-06-16 |
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metawrap-mg
|
public |
MetaWRAP is a pipeline for genome-resolved metagenomic data analysis
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2023-06-16 |
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tsv-utils
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public |
eBay's TSV Utilities
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2023-06-16 |
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dnaweaver_synbiocad
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public |
Build the genetic designs generated by the SynBioCAD project using either Golden Gate or Gibson assembly
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2023-06-16 |
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longqc
|
public |
LongQC is a tool for the data quality control of the PacBio and ONT long reads
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2023-06-16 |
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igda-script
|
public |
The wrapper script of iGDA to detect and phase minor SNVs from long-read sequencing data
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2023-06-16 |
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dnaweaver
|
public |
Python library to find optimal strategies for assembling large DNA constructs.
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2023-06-16 |
