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quicksnp
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public |
A python script to quickly build a Neighbor Joining tree using only a SNP distance matrix.
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2025-04-22 |
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fiji-simple_omero_client
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public |
Java library to simplify API to put/get objects on an OMERO server from Fiji/ImageJ.
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2025-04-22 |
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samestr
|
public |
SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
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2025-04-22 |
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pyham
|
public |
A tool to analyse Hierarchical Orthologous Groups (HOGs)
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2025-04-22 |
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pastrami
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public |
Pastrami is a novel, scalable computational algorithm for rapid human ancestry estimation.
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2025-04-22 |
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lja
|
public |
La Jolla Assembler(LJA) - tool for genome assembly from PacBio HiFI reads based on de Bruijn graphs
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2025-04-22 |
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zarp
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public |
User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline
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2025-04-22 |
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fiji-omero_ij
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public |
ImageJ / Fiji plugin to visualize and manipulate both image data and metadata maintained at an OMERO server site.
|
2025-04-22 |
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rrmscorer
|
public |
RRMScorer (RRM-RNA score predictor) predicts how likely a single RRM is to bind ssRNA
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2025-04-22 |
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mindagap
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public |
Takes a single panorama image and fills the empty grid lines with neighbour-weighted values.
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2025-04-22 |
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deepmicro
|
public |
Deep representation learning framework
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2025-04-22 |
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ngsindex
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public |
Utilities for working with NGS index formats.
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2025-04-22 |
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baypass
|
public |
Genome-Wide Scan for Adaptive Differentiation and Association Analysis with population-specific covariables.
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2025-04-22 |
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unikseq
|
public |
Unique DNA sequence region identification using a k-mer approach
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2025-04-22 |
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multixrank
|
public |
MultiXrank - heterogeneous MULTIlayer eXploration by RANdom walK with restart. MultiXrank is a Python package for the exploration of heterogeneous multilayer networks, with random walk with restart method. It permits prioritization of nodes between full heterogeneous networks, whatever their complexities.
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2025-04-22 |
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contignet
|
public |
ContigNet, a deep learning based phage-host interaction prediction tool
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2025-04-22 |
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catfasta2phyml
|
public |
Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
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2025-04-22 |
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get_fasta_info
|
public |
get_FAST{A,Q}_info - Get fast info on fasta and fastq files
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2025-04-22 |
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proteomiqon-alignmentbasedquantification
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public |
Given an MS run in the mzLite or mzml format and a list of a list of peptides deduced by alignment, this tool iterates accross all and performs an XIC extration and quantification in similar to the PSMbasedQuantification tool.
|
2025-04-22 |
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ncbi-datasets-pylib
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public |
Easily gather data from across NCBI databases
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2025-04-22 |
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fastagap
|
public |
Count and remove missing data in fasta-formatted sequence data
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2025-04-22 |
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deltamsi
|
public |
DeltaMSI: AI-based modeling of microsatellite instability scoring on NGS data
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2025-04-22 |
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calisp
|
public |
Estimate isotopic composition of peptides from proteomics mass spectrometry data.
|
2025-04-22 |
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trackplot
|
public |
The trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.
|
2025-04-22 |
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mmannot
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public |
mmannot annotates reads, or quantifies the features. mmmannot takes special care of multi-mapping reads.
|
2025-04-22 |
