| Package Name | Access | Summary | Updated |
|---|---|---|---|
| milonga | public | MiLongA - A snakemake workflow for Microbial Long-read Assembly | 2025-04-22 |
| drprg | public | Drug resistance prediction with reference graphs | 2025-04-22 |
| brooklyn_plot | public | Gene co-expression and transcriptional bursting pattern recognition tool in single cell/nucleus RNA-sequencing data | 2025-04-22 |
| qiskit-xyz2pdb | public | qiskit-xyz2pdb | 2025-04-22 |
| ffgc | public | Family Free Genome Comparison (FFGC) workflow | 2025-04-22 |
| bamstats | public | A command line tool to compute mapping statistics from a BAM file | 2025-04-22 |
| viralflye | public | viralFlye is a pipeline to recover high-quality viral genomes from long-read metagenomic sequencing. | 2025-04-22 |
| varvamp | public | Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses. | 2025-04-22 |
| fastquast | public | Fast and simple Quality Assessment Tool for Large Genomes | 2025-04-22 |
| core-snp-filter | public | Filtering sites (i.e. columns) in a FASTA-format whole-genome pseudo-alignment. | 2025-04-22 |
| ncbi-fcs-gx | public | The NCBI Foreign Contamination Screen. Genomic cross-species aligner, for contamination detection. | 2025-04-22 |
| maast | public | Microbial agile accurate SNP Typer | 2025-04-22 |
| quicksnp | public | A python script to quickly build a Neighbor Joining tree using only a SNP distance matrix. | 2025-04-22 |
| fiji-simple_omero_client | public | Java library to simplify API to put/get objects on an OMERO server from Fiji/ImageJ. | 2025-04-22 |
| samestr | public | SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles. | 2025-04-22 |
| pyham | public | A tool to analyse Hierarchical Orthologous Groups (HOGs) | 2025-04-22 |
| pastrami | public | Pastrami is a novel, scalable computational algorithm for rapid human ancestry estimation. | 2025-04-22 |
| lja | public | La Jolla Assembler(LJA) - tool for genome assembly from PacBio HiFI reads based on de Bruijn graphs | 2025-04-22 |
| zarp | public | User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline | 2025-04-22 |
| fiji-omero_ij | public | ImageJ / Fiji plugin to visualize and manipulate both image data and metadata maintained at an OMERO server site. | 2025-04-22 |
| rrmscorer | public | RRMScorer (RRM-RNA score predictor) predicts how likely a single RRM is to bind ssRNA | 2025-04-22 |
| mindagap | public | Takes a single panorama image and fills the empty grid lines with neighbour-weighted values. | 2025-04-22 |
| deepmicro | public | Deep representation learning framework | 2025-04-22 |
| ngsindex | public | Utilities for working with NGS index formats. | 2025-04-22 |
| baypass | public | Genome-Wide Scan for Adaptive Differentiation and Association Analysis with population-specific covariables. | 2025-04-22 |
