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calisp
|
public |
Estimate isotopic composition of peptides from proteomics mass spectrometry data.
|
2025-04-22 |
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trackplot
|
public |
The trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.
|
2025-04-22 |
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mmannot
|
public |
mmannot annotates reads, or quantifies the features. mmmannot takes special care of multi-mapping reads.
|
2025-04-22 |
|
libshorah
|
public |
libshorah - Short Reads Assembly into Haplotypes
|
2025-04-22 |
|
imods
|
public |
toolkit to perform Normal Mode Analysis (NMA) in internal coordinates (IC) on both protein and nucleic acid atomic structures.
|
2025-04-22 |
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hmftools-sigs
|
public |
Fits sample SNV counts to trinucleotide signature definitions.
|
2025-04-22 |
|
hmftools-rose
|
public |
ROSE makes an actionability summary of the clinical relevant (for the Netherlands) genomic events and signatures as determined by the Hartwig pipeline.
|
2025-04-22 |
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graphmb
|
public |
GraphMB is a Metagenomic Binner developed for long-read assemblies, that takes advantage of graph machine learning algorithms and the assembly graph generated during assembly.
|
2025-04-22 |
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obonet
|
public |
Parse OBO formatted ontologies into networkx
|
2025-04-22 |
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hmftools-protect
|
public |
PROTECT determines the clinical evidence applicable for a particular tumor sample based on all genomic events and signatures that are determined by the Hartwig pipeline.
|
2025-04-22 |
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phaser
|
public |
phASEr performs haplotype phasing and provides measures of haplotypic expression for RNA based assays.
|
2025-04-22 |
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metagem
|
public |
Generate context specific genome-scale metabolic models and predict metabolic interactions directly from metagenomic data
|
2025-04-22 |
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hmftools-sv-prep
|
public |
SV Prep generates a maximally filtered SV BAM file by identifying candidate SV junctions and extracting all reads that may provide support to that junction.
|
2025-04-22 |
|
authentict
|
public |
Estimates present-day DNA contamination in ancient DNA single-stranded libraries.
|
2025-04-22 |
|
r-chromium
|
public |
Toolkit for 10X Genomics Chromium single cell data.
|
2025-04-22 |
|
bactopia-teton
|
public |
Methods used by Bactopia for taxonomic classification
|
2025-04-22 |
|
bactopia-variants
|
public |
Methods used by Bactopia for SNP and InDel analysis
|
2025-04-22 |
|
insurveyor
|
public |
An insertion caller for Illumina paired-end WGS data.
|
2025-04-22 |
|
shapeit5
|
public |
Fast and accurate method for estimation of haplotypes (phasing)
|
2025-04-22 |
|
drtransformer
|
public |
Heuristic cotranscriptional folding using the nearest neighbor energy model.
|
2025-04-22 |
|
hmnqc
|
public |
Compute differents metrics about quality, check identity and coverage from high-throughput sequencing provided by targeted NGS
|
2025-04-22 |
|
bactopia-assembler
|
public |
The assembly process used by Bactopia.
|
2025-04-22 |
|
bactopia-gather
|
public |
The methods used in Bactopia to gather all samples into one place
|
2025-04-22 |
|
bactopia-qc
|
public |
The methods used in Bactopia for read QC
|
2025-04-22 |
|
bactopia-sketcher
|
public |
Methods used by Bactopia for minmer sketching
|
2025-04-22 |
